miRNA display CGI


Results 1 - 20 of 555 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 5' -63.2 NC_006146.1 + 170328 0.7 0.390421
Target:  5'- cGCGCCCCCgGCC-CC-UCUCCugggagGCCACg -3'
miRNA:   3'- -CGUGGGGG-CGGuGGuGGAGG------CGGUGg -5'
28997 5' -63.2 NC_006146.1 + 170019 0.67 0.594431
Target:  5'- gGCcuuCCCCCGUCugC-UC-CCGCgGCCa -3'
miRNA:   3'- -CGu--GGGGGCGGugGuGGaGGCGgUGG- -5'
28997 5' -63.2 NC_006146.1 + 169397 0.7 0.390421
Target:  5'- cGCGCCCCCgGCC-CC-UCUCCugggagGCCACg -3'
miRNA:   3'- -CGUGGGGG-CGGuGGuGGAGG------CGGUGg -5'
28997 5' -63.2 NC_006146.1 + 169087 0.67 0.594431
Target:  5'- gGCcuuCCCCCGUCugC-UC-CCGCgGCCa -3'
miRNA:   3'- -CGu--GGGGGCGGugGuGGaGGCGgUGG- -5'
28997 5' -63.2 NC_006146.1 + 168465 0.7 0.390421
Target:  5'- cGCGCCCCCgGCC-CC-UCUCCugggagGCCACg -3'
miRNA:   3'- -CGUGGGGG-CGGuGGuGGAGG------CGGUGg -5'
28997 5' -63.2 NC_006146.1 + 168430 0.75 0.197728
Target:  5'- -uGCCCCCGCCgGCCACa-CCGCCAa- -3'
miRNA:   3'- cgUGGGGGCGG-UGGUGgaGGCGGUgg -5'
28997 5' -63.2 NC_006146.1 + 168155 0.67 0.594431
Target:  5'- gGCcuuCCCCCGUCugC-UC-CCGCgGCCa -3'
miRNA:   3'- -CGu--GGGGGCGGugGuGGaGGCGgUGG- -5'
28997 5' -63.2 NC_006146.1 + 168066 0.7 0.431085
Target:  5'- gGCACCCCgcuccuggCGUgACa--UUCCGCCACCg -3'
miRNA:   3'- -CGUGGGG--------GCGgUGgugGAGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 167533 0.7 0.390421
Target:  5'- cGCGCCCCCgGCC-CC-UCUCCugggagGCCACg -3'
miRNA:   3'- -CGUGGGGG-CGGuGGuGGAGG------CGGUGg -5'
28997 5' -63.2 NC_006146.1 + 167498 0.68 0.537722
Target:  5'- -gGCCCCCccugcaggcGCCgGCC-CCUCCcGCCgGCCa -3'
miRNA:   3'- cgUGGGGG---------CGG-UGGuGGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 167223 0.67 0.594431
Target:  5'- gGCcuuCCCCCGUCugC-UC-CCGCgGCCa -3'
miRNA:   3'- -CGu--GGGGGCGGugGuGGaGGCGgUGG- -5'
28997 5' -63.2 NC_006146.1 + 167065 0.66 0.613588
Target:  5'- uCGCCCuCCGCUcCCcCCUCcCGCCGg- -3'
miRNA:   3'- cGUGGG-GGCGGuGGuGGAG-GCGGUgg -5'
28997 5' -63.2 NC_006146.1 + 166954 0.66 0.651036
Target:  5'- uGguCCCCuCGCCACUGCUggucccgUCCGaaACCc -3'
miRNA:   3'- -CguGGGG-GCGGUGGUGG-------AGGCggUGG- -5'
28997 5' -63.2 NC_006146.1 + 166896 0.66 0.66158
Target:  5'- aCACCCCCcucCCAUUGCC-CCGUCuCCc -3'
miRNA:   3'- cGUGGGGGc--GGUGGUGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 166395 0.69 0.46534
Target:  5'- uCAcCCCCCGCUggcCCGCCagUGCCAUCu -3'
miRNA:   3'- cGU-GGGGGCGGu--GGUGGagGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 166231 0.69 0.48299
Target:  5'- -uGCCCCCGCCucgcCCACC-CgGCC-Ca -3'
miRNA:   3'- cgUGGGGGCGGu---GGUGGaGgCGGuGg -5'
28997 5' -63.2 NC_006146.1 + 166051 0.68 0.519211
Target:  5'- cCGCCCCUGCCccuauuCC-CCUCCauGCUGCUg -3'
miRNA:   3'- cGUGGGGGCGGu-----GGuGGAGG--CGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 165106 0.66 0.642398
Target:  5'- -uGCCUCCGUCuCCuucauuGCCUCCauuuCCACCg -3'
miRNA:   3'- cgUGGGGGCGGuGG------UGGAGGc---GGUGG- -5'
28997 5' -63.2 NC_006146.1 + 165028 0.69 0.46534
Target:  5'- -uGCCUCCGuuuCCAUUGCCUCCGUCuCCu -3'
miRNA:   3'- cgUGGGGGC---GGUGGUGGAGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 164983 0.7 0.422753
Target:  5'- -uGCCUCCGucuCCAUUGCCUCCGUCuCCa -3'
miRNA:   3'- cgUGGGGGC---GGUGGUGGAGGCGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.