Results 1 - 20 of 555 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28997 | 5' | -63.2 | NC_006146.1 | + | 30770 | 1.11 | 0.000602 |
Target: 5'- gGCACCCCCGCCACCACCUCCGCCACCc -3' miRNA: 3'- -CGUGGGGGCGGUGGUGGAGGCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 138008 | 0.76 | 0.167651 |
Target: 5'- uGCGCCCCCaGCCggacccugguGCCaggcagggACCUCgCGCCGCCc -3' miRNA: 3'- -CGUGGGGG-CGG----------UGG--------UGGAG-GCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 117906 | 0.76 | 0.188684 |
Target: 5'- -gACCCCCGCgGCCACggccggcaggUCCGCCugCg -3' miRNA: 3'- cgUGGGGGCGgUGGUGg---------AGGCGGugG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 129607 | 0.65 | 0.668277 |
Target: 5'- -aGCCCCUGCCccucaccguggagcACCuACCUgaCGCC-CCg -3' miRNA: 3'- cgUGGGGGCGG--------------UGG-UGGAg-GCGGuGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 47198 | 0.81 | 0.082454 |
Target: 5'- cCGCCCCgagCGCCaggccccugGCCGCCUCCGCCACg -3' miRNA: 3'- cGUGGGG---GCGG---------UGGUGGAGGCGGUGg -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 54959 | 0.8 | 0.103135 |
Target: 5'- gGCgACCgCCGCCGCCGCUaCCGCUGCCc -3' miRNA: 3'- -CG-UGGgGGCGGUGGUGGaGGCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 156874 | 0.79 | 0.105714 |
Target: 5'- -uGCCCCCGCCugCucccugcCCUCCGCCuuCCa -3' miRNA: 3'- cgUGGGGGCGGugGu------GGAGGCGGu-GG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 129420 | 0.79 | 0.111055 |
Target: 5'- cGCACCCCaagGCCcagcaacaucACCGCCgCUGCCACCg -3' miRNA: 3'- -CGUGGGGg--CGG----------UGGUGGaGGCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 159457 | 0.78 | 0.131798 |
Target: 5'- -aACUCCUugaggGCCGCCACCUUgGCCACCu -3' miRNA: 3'- cgUGGGGG-----CGGUGGUGGAGgCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 34178 | 0.76 | 0.167651 |
Target: 5'- uGCGCCCCCaGCCggacccugguGCCaggcagggACCUCgCGCCGCCc -3' miRNA: 3'- -CGUGGGGG-CGG----------UGG--------UGGAG-GCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 30828 | 0.77 | 0.148744 |
Target: 5'- cCACCCCCuCCACCacccccuguucaACCUCCuCCACCa -3' miRNA: 3'- cGUGGGGGcGGUGG------------UGGAGGcGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 113880 | 0.78 | 0.125532 |
Target: 5'- cGCACuCCaCCGCCACCuccuCCUCgGCCAUg -3' miRNA: 3'- -CGUG-GG-GGCGGUGGu---GGAGgCGGUGg -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 99938 | 0.86 | 0.035698 |
Target: 5'- cGCACCCCCGCUcCCGCCUCCuCCGCa -3' miRNA: 3'- -CGUGGGGGCGGuGGUGGAGGcGGUGg -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 48516 | 0.77 | 0.148744 |
Target: 5'- aGCACCUCCgcguuccugGCCGCCGCaUCCGCCuucGCCg -3' miRNA: 3'- -CGUGGGGG---------CGGUGGUGgAGGCGG---UGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 30795 | 0.84 | 0.051046 |
Target: 5'- --nCCCCUcuuCCACCACCUCCGCCACCc -3' miRNA: 3'- cguGGGGGc--GGUGGUGGAGGCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 109036 | 0.79 | 0.119542 |
Target: 5'- cGCGCCCCCGUgGagACCUCUGCC-CCg -3' miRNA: 3'- -CGUGGGGGCGgUggUGGAGGCGGuGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 9135 | 0.76 | 0.167651 |
Target: 5'- -gGCCCCCGCCcaggcGCCcCCUcggaccucagCCGCCACCc -3' miRNA: 3'- cgUGGGGGCGG-----UGGuGGA----------GGCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 92936 | 0.76 | 0.171682 |
Target: 5'- gGCACCUCCaagGCCACCGgCUCCgGCCcagACCa -3' miRNA: 3'- -CGUGGGGG---CGGUGGUgGAGG-CGG---UGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 93073 | 0.83 | 0.056504 |
Target: 5'- --cCCCCCGCCGCCccCCUCCGCCGuCCu -3' miRNA: 3'- cguGGGGGCGGUGGu-GGAGGCGGU-GG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 69028 | 0.79 | 0.105714 |
Target: 5'- -gAUUCCCGCCACCGuCCUcgccCCGCCACCc -3' miRNA: 3'- cgUGGGGGCGGUGGU-GGA----GGCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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