miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28998 3' -56.6 NC_006146.1 + 92062 0.66 0.903296
Target:  5'- gGGCCCGgCCUgGGGCugCugcUGGGg- -3'
miRNA:   3'- gUCGGGUgGGAgUCUGugGu--ACCUac -5'
28998 3' -56.6 NC_006146.1 + 161751 0.66 0.903296
Target:  5'- gAGCCCGCCgUCcccgaaagAGGCAacgccCCGUGGGa- -3'
miRNA:   3'- gUCGGGUGGgAG--------UCUGU-----GGUACCUac -5'
28998 3' -56.6 NC_006146.1 + 70630 0.66 0.903296
Target:  5'- cCAGCCC-CCgCUaggAGGCuCCAUGGAg- -3'
miRNA:   3'- -GUCGGGuGG-GAg--UCUGuGGUACCUac -5'
28998 3' -56.6 NC_006146.1 + 74105 0.66 0.896916
Target:  5'- aAGCCUGCagCUgAGACuCCAUGGAg- -3'
miRNA:   3'- gUCGGGUGg-GAgUCUGuGGUACCUac -5'
28998 3' -56.6 NC_006146.1 + 147958 0.66 0.896916
Target:  5'- gCAGCCgGCCUUCAuuC-CC-UGGAUGg -3'
miRNA:   3'- -GUCGGgUGGGAGUcuGuGGuACCUAC- -5'
28998 3' -56.6 NC_006146.1 + 107257 0.66 0.896916
Target:  5'- cCAGCaccauCACCUUCAGGCACagcgGGAa- -3'
miRNA:   3'- -GUCGg----GUGGGAGUCUGUGgua-CCUac -5'
28998 3' -56.6 NC_006146.1 + 34938 0.66 0.896916
Target:  5'- --cCCCACCC-CAG-CACCccgGGGUGa -3'
miRNA:   3'- gucGGGUGGGaGUCuGUGGua-CCUAC- -5'
28998 3' -56.6 NC_006146.1 + 138768 0.66 0.896916
Target:  5'- --cCCCACCC-CAG-CACCccgGGGUGa -3'
miRNA:   3'- gucGGGUGGGaGUCuGUGGua-CCUAC- -5'
28998 3' -56.6 NC_006146.1 + 49572 0.66 0.896916
Target:  5'- aGGCCCAgCgCUgAGGCcagggugggGCUGUGGAUGg -3'
miRNA:   3'- gUCGGGUgG-GAgUCUG---------UGGUACCUAC- -5'
28998 3' -56.6 NC_006146.1 + 131946 0.66 0.896916
Target:  5'- gGGCCCACCC--GGAUGCCAaGGc-- -3'
miRNA:   3'- gUCGGGUGGGagUCUGUGGUaCCuac -5'
28998 3' -56.6 NC_006146.1 + 130024 0.66 0.896916
Target:  5'- -uGCUCcgugauguagGCCCUaCAGAcCACCAUGGAc- -3'
miRNA:   3'- guCGGG----------UGGGA-GUCU-GUGGUACCUac -5'
28998 3' -56.6 NC_006146.1 + 49761 0.66 0.896916
Target:  5'- gCGGCCCAggCC-CAGACGCCGgcuGAUGu -3'
miRNA:   3'- -GUCGGGUg-GGaGUCUGUGGUac-CUAC- -5'
28998 3' -56.6 NC_006146.1 + 136951 0.66 0.890306
Target:  5'- -cGCCCACCCggaccagCGGAC-CCAgcGGAc- -3'
miRNA:   3'- guCGGGUGGGa------GUCUGuGGUa-CCUac -5'
28998 3' -56.6 NC_006146.1 + 18373 0.66 0.890306
Target:  5'- -uGCUCACCCUgguccUGGugGCCG-GGGUGg -3'
miRNA:   3'- guCGGGUGGGA-----GUCugUGGUaCCUAC- -5'
28998 3' -56.6 NC_006146.1 + 137138 0.66 0.890306
Target:  5'- -cGCCCACCCggaccagCGGAC-CCAgcGGAc- -3'
miRNA:   3'- guCGGGUGGGa------GUCUGuGGUa-CCUac -5'
28998 3' -56.6 NC_006146.1 + 849 0.66 0.883471
Target:  5'- gCGGCCCcggGCCCUCcccGACAuCCAgGGAc- -3'
miRNA:   3'- -GUCGGG---UGGGAGu--CUGU-GGUaCCUac -5'
28998 3' -56.6 NC_006146.1 + 1781 0.66 0.883471
Target:  5'- gCGGCCCcggGCCCUCcccGACAuCCAgGGAc- -3'
miRNA:   3'- -GUCGGG---UGGGAGu--CUGU-GGUaCCUac -5'
28998 3' -56.6 NC_006146.1 + 2713 0.66 0.883471
Target:  5'- gCGGCCCcggGCCCUCcccGACAuCCAgGGAc- -3'
miRNA:   3'- -GUCGGG---UGGGAGu--CUGU-GGUaCCUac -5'
28998 3' -56.6 NC_006146.1 + 3645 0.66 0.883471
Target:  5'- gCGGCCCcggGCCCUCcccGACAuCCAgGGAc- -3'
miRNA:   3'- -GUCGGG---UGGGAGu--CUGU-GGUaCCUac -5'
28998 3' -56.6 NC_006146.1 + 159351 0.66 0.883471
Target:  5'- gCAGCCC-CCCUUAGGgACCGcugauUGGc-- -3'
miRNA:   3'- -GUCGGGuGGGAGUCUgUGGU-----ACCuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.