miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28998 5' -56.5 NC_006146.1 + 37916 0.66 0.916295
Target:  5'- aUCACCGCAcCGCGGUCUCCa------ -3'
miRNA:   3'- gAGUGGUGU-GUGUCAGAGGcacccga -5'
28998 5' -56.5 NC_006146.1 + 124985 0.66 0.916295
Target:  5'- -cCACCuACgGCACGGUCaCCGgccGGGCg -3'
miRNA:   3'- gaGUGG-UG-UGUGUCAGaGGCa--CCCGa -5'
28998 5' -56.5 NC_006146.1 + 25401 0.66 0.898062
Target:  5'- --gGCUACGuCAgAGUCUCCGUGGaCa -3'
miRNA:   3'- gagUGGUGU-GUgUCAGAGGCACCcGa -5'
28998 5' -56.5 NC_006146.1 + 169219 0.66 0.891526
Target:  5'- -gCugCACGCGCGG-CggcgCCGgccggGGGCUg -3'
miRNA:   3'- gaGugGUGUGUGUCaGa---GGCa----CCCGA- -5'
28998 5' -56.5 NC_006146.1 + 168287 0.66 0.891526
Target:  5'- -gCugCACGCGCGG-CggcgCCGgccggGGGCUg -3'
miRNA:   3'- gaGugGUGUGUGUCaGa---GGCa----CCCGA- -5'
28998 5' -56.5 NC_006146.1 + 167355 0.66 0.891526
Target:  5'- -gCugCACGCGCGG-CggcgCCGgccggGGGCUg -3'
miRNA:   3'- gaGugGUGUGUGUCaGa---GGCa----CCCGA- -5'
28998 5' -56.5 NC_006146.1 + 31319 0.66 0.891526
Target:  5'- cCUCGCCcCcCGCAGcCUCauUGGGCUu -3'
miRNA:   3'- -GAGUGGuGuGUGUCaGAGgcACCCGA- -5'
28998 5' -56.5 NC_006146.1 + 170150 0.66 0.891526
Target:  5'- -gCugCACGCGCGG-CggcgCCGgccggGGGCUg -3'
miRNA:   3'- gaGugGUGUGUGUCaGa---GGCa----CCCGA- -5'
28998 5' -56.5 NC_006146.1 + 76565 0.66 0.884766
Target:  5'- uUCGCCGaccaggACAUGGUCcCCGUGGGg- -3'
miRNA:   3'- gAGUGGUg-----UGUGUCAGaGGCACCCga -5'
28998 5' -56.5 NC_006146.1 + 38380 0.67 0.877786
Target:  5'- --gGCCACG--UAGUCUCUGUGGuGCg -3'
miRNA:   3'- gagUGGUGUguGUCAGAGGCACC-CGa -5'
28998 5' -56.5 NC_006146.1 + 3716 0.67 0.877786
Target:  5'- -aCACaCAgACAgGGUCUCUGgGGGCc -3'
miRNA:   3'- gaGUG-GUgUGUgUCAGAGGCaCCCGa -5'
28998 5' -56.5 NC_006146.1 + 164783 0.67 0.877786
Target:  5'- aUgACCGC-UugGGUUUCUGUGGGUUu -3'
miRNA:   3'- gAgUGGUGuGugUCAGAGGCACCCGA- -5'
28998 5' -56.5 NC_006146.1 + 75974 0.67 0.862432
Target:  5'- --gGCCACguccccuGCAUcGUCUgCGUGGGCUc -3'
miRNA:   3'- gagUGGUG-------UGUGuCAGAgGCACCCGA- -5'
28998 5' -56.5 NC_006146.1 + 4726 0.67 0.855573
Target:  5'- aUCcCCACGCACGGcUCUCCcauUGGuGCa -3'
miRNA:   3'- gAGuGGUGUGUGUC-AGAGGc--ACC-CGa -5'
28998 5' -56.5 NC_006146.1 + 81776 0.67 0.855573
Target:  5'- aUgGCCGC-C-CGGUCUCCGgGGGUg -3'
miRNA:   3'- gAgUGGUGuGuGUCAGAGGCaCCCGa -5'
28998 5' -56.5 NC_006146.1 + 71906 0.67 0.855573
Target:  5'- cCUC-CUGCGCGCGGcCUCUGaccUGGGCc -3'
miRNA:   3'- -GAGuGGUGUGUGUCaGAGGC---ACCCGa -5'
28998 5' -56.5 NC_006146.1 + 39838 0.68 0.814669
Target:  5'- cCUCgGCCGCACAguGgg-CCGgcggGGGCUg -3'
miRNA:   3'- -GAG-UGGUGUGUguCagaGGCa---CCCGA- -5'
28998 5' -56.5 NC_006146.1 + 58039 0.69 0.760312
Target:  5'- --gGCCuacgaGCGCAUAGUCUCCGccGGCUa -3'
miRNA:   3'- gagUGG-----UGUGUGUCAGAGGCacCCGA- -5'
28998 5' -56.5 NC_006146.1 + 133193 0.69 0.750811
Target:  5'- -aCACCACACGauccacuaGGUCUCaCcUGGGCUc -3'
miRNA:   3'- gaGUGGUGUGUg-------UCAGAG-GcACCCGA- -5'
28998 5' -56.5 NC_006146.1 + 98903 0.7 0.731508
Target:  5'- aCUCACC-CGCGCcagGGUCUCCuccaaaggaUGGGCg -3'
miRNA:   3'- -GAGUGGuGUGUG---UCAGAGGc--------ACCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.