Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28998 | 5' | -56.5 | NC_006146.1 | + | 55370 | 0.71 | 0.661751 |
Target: 5'- -cCACCGCGCGCGGgacgC-CCG-GGGCa -3' miRNA: 3'- gaGUGGUGUGUGUCa---GaGGCaCCCGa -5' |
|||||||
28998 | 5' | -56.5 | NC_006146.1 | + | 85245 | 0.72 | 0.611039 |
Target: 5'- uUCAuCCAC-CAgGGUCcCCGUGGGCc -3' miRNA: 3'- gAGU-GGUGuGUgUCAGaGGCACCCGa -5' |
|||||||
28998 | 5' | -56.5 | NC_006146.1 | + | 1466 | 0.72 | 0.580737 |
Target: 5'- -cCuCCACACACGGccUCUCCGcGGGCc -3' miRNA: 3'- gaGuGGUGUGUGUC--AGAGGCaCCCGa -5' |
|||||||
28998 | 5' | -56.5 | NC_006146.1 | + | 2398 | 0.72 | 0.580737 |
Target: 5'- -cCuCCACACACGGccUCUCCGcGGGCc -3' miRNA: 3'- gaGuGGUGUGUGUC--AGAGGCaCCCGa -5' |
|||||||
28998 | 5' | -56.5 | NC_006146.1 | + | 3330 | 0.72 | 0.580737 |
Target: 5'- -cCuCCACACACGGccUCUCCGcGGGCc -3' miRNA: 3'- gaGuGGUGUGUGUC--AGAGGCaCCCGa -5' |
|||||||
28998 | 5' | -56.5 | NC_006146.1 | + | 535 | 0.72 | 0.580737 |
Target: 5'- -cCuCCACACACGGccUCUCCGcGGGCc -3' miRNA: 3'- gaGuGGUGUGUGUC--AGAGGCaCCCGa -5' |
|||||||
28998 | 5' | -56.5 | NC_006146.1 | + | 56495 | 0.73 | 0.531037 |
Target: 5'- aUCAgCGCGCGCAGUCgggCCGcgGGGUc -3' miRNA: 3'- gAGUgGUGUGUGUCAGa--GGCa-CCCGa -5' |
|||||||
28998 | 5' | -56.5 | NC_006146.1 | + | 31229 | 1.07 | 0.003994 |
Target: 5'- uCUCACCACACACAGUCUCCGUGGGCUc -3' miRNA: 3'- -GAGUGGUGUGUGUCAGAGGCACCCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home