miRNA display CGI


Results 21 - 28 of 28 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28998 5' -56.5 NC_006146.1 + 55370 0.71 0.661751
Target:  5'- -cCACCGCGCGCGGgacgC-CCG-GGGCa -3'
miRNA:   3'- gaGUGGUGUGUGUCa---GaGGCaCCCGa -5'
28998 5' -56.5 NC_006146.1 + 85245 0.72 0.611039
Target:  5'- uUCAuCCAC-CAgGGUCcCCGUGGGCc -3'
miRNA:   3'- gAGU-GGUGuGUgUCAGaGGCACCCGa -5'
28998 5' -56.5 NC_006146.1 + 1466 0.72 0.580737
Target:  5'- -cCuCCACACACGGccUCUCCGcGGGCc -3'
miRNA:   3'- gaGuGGUGUGUGUC--AGAGGCaCCCGa -5'
28998 5' -56.5 NC_006146.1 + 2398 0.72 0.580737
Target:  5'- -cCuCCACACACGGccUCUCCGcGGGCc -3'
miRNA:   3'- gaGuGGUGUGUGUC--AGAGGCaCCCGa -5'
28998 5' -56.5 NC_006146.1 + 3330 0.72 0.580737
Target:  5'- -cCuCCACACACGGccUCUCCGcGGGCc -3'
miRNA:   3'- gaGuGGUGUGUGUC--AGAGGCaCCCGa -5'
28998 5' -56.5 NC_006146.1 + 535 0.72 0.580737
Target:  5'- -cCuCCACACACGGccUCUCCGcGGGCc -3'
miRNA:   3'- gaGuGGUGUGUGUC--AGAGGCaCCCGa -5'
28998 5' -56.5 NC_006146.1 + 56495 0.73 0.531037
Target:  5'- aUCAgCGCGCGCAGUCgggCCGcgGGGUc -3'
miRNA:   3'- gAGUgGUGUGUGUCAGa--GGCa-CCCGa -5'
28998 5' -56.5 NC_006146.1 + 31229 1.07 0.003994
Target:  5'- uCUCACCACACACAGUCUCCGUGGGCUc -3'
miRNA:   3'- -GAGUGGUGUGUGUCAGAGGCACCCGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.