miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28999 3' -58.7 NC_006146.1 + 15817 0.66 0.843863
Target:  5'- cUCCCUgaucUGGCCCggcaucgagCCGagcgauuggaUAgAGACCUCCUu -3'
miRNA:   3'- -GGGGA----ACCGGG---------GGU----------AUgUCUGGAGGA- -5'
28999 3' -58.7 NC_006146.1 + 121707 0.66 0.843863
Target:  5'- aCCCCaUGGUCUCCGaggcccUGCAcACCUUCg -3'
miRNA:   3'- -GGGGaACCGGGGGU------AUGUcUGGAGGa -5'
28999 3' -58.7 NC_006146.1 + 1146 0.66 0.843863
Target:  5'- cCCCCgcgagGGUCCCCGggccgcccCGGGgCUCCc -3'
miRNA:   3'- -GGGGaa---CCGGGGGUau------GUCUgGAGGa -5'
28999 3' -58.7 NC_006146.1 + 2078 0.66 0.843863
Target:  5'- cCCCCgcgagGGUCCCCGggccgcccCGGGgCUCCc -3'
miRNA:   3'- -GGGGaa---CCGGGGGUau------GUCUgGAGGa -5'
28999 3' -58.7 NC_006146.1 + 3010 0.66 0.843863
Target:  5'- cCCCCgcgagGGUCCCCGggccgcccCGGGgCUCCc -3'
miRNA:   3'- -GGGGaa---CCGGGGGUau------GUCUgGAGGa -5'
28999 3' -58.7 NC_006146.1 + 15334 0.66 0.843863
Target:  5'- gCCCCUggcgGGCgCCCCGcGCGaGCCcggcUCCa -3'
miRNA:   3'- -GGGGAa---CCG-GGGGUaUGUcUGG----AGGa -5'
28999 3' -58.7 NC_006146.1 + 44959 0.66 0.843863
Target:  5'- aCCCCUucuccUGGCUCCgCA---AGACCUCg- -3'
miRNA:   3'- -GGGGA-----ACCGGGG-GUaugUCUGGAGga -5'
28999 3' -58.7 NC_006146.1 + 72446 0.66 0.843863
Target:  5'- aCCCagagacUGGCCCCCGgGCGGcGCCgaaaCCg -3'
miRNA:   3'- -GGGga----ACCGGGGGUaUGUC-UGGa---GGa -5'
28999 3' -58.7 NC_006146.1 + 166399 0.66 0.843863
Target:  5'- cCCCCgcUGGCCCgCCAgUGCc-AUCUCCa -3'
miRNA:   3'- -GGGGa-ACCGGG-GGU-AUGucUGGAGGa -5'
28999 3' -58.7 NC_006146.1 + 54245 0.66 0.843863
Target:  5'- gCCUCUgggcGGCCCCgGUcagGCGGGaaacguCCUCCg -3'
miRNA:   3'- -GGGGAa---CCGGGGgUA---UGUCU------GGAGGa -5'
28999 3' -58.7 NC_006146.1 + 33544 0.66 0.835917
Target:  5'- gCCCggcuugccUGGCCCUgGUGCu--CCUCCg -3'
miRNA:   3'- gGGGa-------ACCGGGGgUAUGucuGGAGGa -5'
28999 3' -58.7 NC_006146.1 + 31830 0.66 0.835917
Target:  5'- cCCCCgcgccaccagGGCCCgUAUGguGGCCgCCa -3'
miRNA:   3'- -GGGGaa--------CCGGGgGUAUguCUGGaGGa -5'
28999 3' -58.7 NC_006146.1 + 94321 0.66 0.835917
Target:  5'- gUCCUgcucGGUCCCCAcGgGGACCaugUCCUg -3'
miRNA:   3'- gGGGAa---CCGGGGGUaUgUCUGG---AGGA- -5'
28999 3' -58.7 NC_006146.1 + 80736 0.66 0.835917
Target:  5'- nCCCUgccgcGGCCUCUAccuCGGcuGCCUCCUg -3'
miRNA:   3'- gGGGAa----CCGGGGGUau-GUC--UGGAGGA- -5'
28999 3' -58.7 NC_006146.1 + 115887 0.66 0.835917
Target:  5'- aUCCCgcccGCCCCCAUcccgcccgGgGGGCUUCCg -3'
miRNA:   3'- -GGGGaac-CGGGGGUA--------UgUCUGGAGGa -5'
28999 3' -58.7 NC_006146.1 + 55720 0.66 0.835113
Target:  5'- gCCCgccgcUGGCCUCCGcgUACacgcccaAGAUCUCCa -3'
miRNA:   3'- gGGGa----ACCGGGGGU--AUG-------UCUGGAGGa -5'
28999 3' -58.7 NC_006146.1 + 121032 0.66 0.831065
Target:  5'- aCCCCa--GCCUCCcgACGgugauggacuuugacGACCUCCUg -3'
miRNA:   3'- -GGGGaacCGGGGGuaUGU---------------CUGGAGGA- -5'
28999 3' -58.7 NC_006146.1 + 34158 0.66 0.828615
Target:  5'- gCCCCggcgaggguggggggUGcGCCCCCAgcCGGACC-CUg -3'
miRNA:   3'- -GGGGa--------------AC-CGGGGGUauGUCUGGaGGa -5'
28999 3' -58.7 NC_006146.1 + 154458 0.66 0.827796
Target:  5'- gCCCUgGGCCCCgAggGCGGcuccCCUCUg -3'
miRNA:   3'- gGGGAaCCGGGGgUa-UGUCu---GGAGGa -5'
28999 3' -58.7 NC_006146.1 + 151380 0.66 0.827796
Target:  5'- gCCCUgGGCCCCgAggGCGGcuccCCUCUg -3'
miRNA:   3'- gGGGAaCCGGGGgUa-UGUCu---GGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.