miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28999 5' -65.4 NC_006146.1 + 42711 0.66 0.566583
Target:  5'- cCCA-GCGCCCgCUCGGGcuggcaGCCGcGGAu -3'
miRNA:   3'- -GGUcCGUGGGgGGGCCCa-----CGGCaCCU- -5'
28999 5' -65.4 NC_006146.1 + 33206 0.66 0.566583
Target:  5'- uCCGGGUGCUCCUggugcuCCGGGgcaGCCG-GGu -3'
miRNA:   3'- -GGUCCGUGGGGG------GGCCCa--CGGCaCCu -5'
28999 5' -65.4 NC_006146.1 + 109032 0.66 0.56565
Target:  5'- -aGGGCGCgCCCCCGuGGagaccucUGCCccgGGAg -3'
miRNA:   3'- ggUCCGUGgGGGGGC-CC-------ACGGca-CCU- -5'
28999 5' -65.4 NC_006146.1 + 8965 0.66 0.56565
Target:  5'- gCCGGGU-CUCCCa-GGGUGCuauccacCGUGGAg -3'
miRNA:   3'- -GGUCCGuGGGGGggCCCACG-------GCACCU- -5'
28999 5' -65.4 NC_006146.1 + 169704 0.66 0.563785
Target:  5'- cCCGGGCuCCCCCUcaCGGGUgggcgcucagaucgGCgCGggGGAg -3'
miRNA:   3'- -GGUCCGuGGGGGG--GCCCA--------------CG-GCa-CCU- -5'
28999 5' -65.4 NC_006146.1 + 167840 0.66 0.563785
Target:  5'- cCCGGGCuCCCCCUcaCGGGUgggcgcucagaucgGCgCGggGGAg -3'
miRNA:   3'- -GGUCCGuGGGGGG--GCCCA--------------CG-GCa-CCU- -5'
28999 5' -65.4 NC_006146.1 + 168772 0.66 0.563785
Target:  5'- cCCGGGCuCCCCCUcaCGGGUgggcgcucagaucgGCgCGggGGAg -3'
miRNA:   3'- -GGUCCGuGGGGGG--GCCCA--------------CG-GCa-CCU- -5'
28999 5' -65.4 NC_006146.1 + 33867 0.66 0.558202
Target:  5'- cCCAGGC-CCCCaCCCGGccuccuccccgggguGUGcCCGgccuacccccguccUGGAg -3'
miRNA:   3'- -GGUCCGuGGGG-GGGCC---------------CAC-GGC--------------ACCU- -5'
28999 5' -65.4 NC_006146.1 + 33680 0.66 0.558202
Target:  5'- cCCAGGC-CCCCaCCCGGcuuccuccccgggguGUGcCCGgccuacccccguucUGGAg -3'
miRNA:   3'- -GGUCCGuGGGG-GGGCC---------------CAC-GGC--------------ACCU- -5'
28999 5' -65.4 NC_006146.1 + 101850 0.66 0.557272
Target:  5'- cUCGGGCugCCgCaCCaCGGGUGgCG-GGGc -3'
miRNA:   3'- -GGUCCGugGG-G-GG-GCCCACgGCaCCU- -5'
28999 5' -65.4 NC_006146.1 + 41206 0.66 0.557272
Target:  5'- -gAGGCGCCCCauccgcgggcaCUGGGcGCgCGUGGc -3'
miRNA:   3'- ggUCCGUGGGGg----------GGCCCaCG-GCACCu -5'
28999 5' -65.4 NC_006146.1 + 139985 0.66 0.557272
Target:  5'- --cGGCGCuCCCCCCuGG-GCCaccaaGUGGGu -3'
miRNA:   3'- gguCCGUG-GGGGGGcCCaCGG-----CACCU- -5'
28999 5' -65.4 NC_006146.1 + 145063 0.66 0.548006
Target:  5'- cCCuGGCGCUggauguaucuCCUCaugaGGGUGCCGagGGAu -3'
miRNA:   3'- -GGuCCGUGG----------GGGGg---CCCACGGCa-CCU- -5'
28999 5' -65.4 NC_006146.1 + 170681 0.66 0.548006
Target:  5'- gCCAGGgGCgCCCCgGGGaccGUCGcGGGg -3'
miRNA:   3'- -GGUCCgUGgGGGGgCCCa--CGGCaCCU- -5'
28999 5' -65.4 NC_006146.1 + 66681 0.66 0.545236
Target:  5'- gCgGGGCACCUCCCUGaacccucggcuugcGGccCCGUGGGg -3'
miRNA:   3'- -GgUCCGUGGGGGGGC--------------CCacGGCACCU- -5'
28999 5' -65.4 NC_006146.1 + 120359 0.66 0.538789
Target:  5'- gCAGGUGCCCaCCCGGGa-CC-UGGAg -3'
miRNA:   3'- gGUCCGUGGGgGGGCCCacGGcACCU- -5'
28999 5' -65.4 NC_006146.1 + 33132 0.66 0.529626
Target:  5'- gCCGGGCcgcuGCCCCgCuCCGGGUGggggGUGGc -3'
miRNA:   3'- -GGUCCG----UGGGG-G-GGCCCACgg--CACCu -5'
28999 5' -65.4 NC_006146.1 + 33256 0.66 0.529626
Target:  5'- gCCGGGCcgcuGCCCCgCuCCGGGUGggggGUGGc -3'
miRNA:   3'- -GGUCCG----UGGGG-G-GGCCCACgg--CACCu -5'
28999 5' -65.4 NC_006146.1 + 130476 0.66 0.529626
Target:  5'- aCgGGGCcgcuGCCgCCCCGGGUGgcuacuuugcccCCGcgGGAg -3'
miRNA:   3'- -GgUCCG----UGGgGGGGCCCAC------------GGCa-CCU- -5'
28999 5' -65.4 NC_006146.1 + 113727 0.66 0.529626
Target:  5'- aCCAGGgGgCCCaCUgGGGUGaggaaggCGUGGAa -3'
miRNA:   3'- -GGUCCgUgGGG-GGgCCCACg------GCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.