Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2900 | 3' | -58.9 | NC_001493.1 | + | 43448 | 0.74 | 0.357959 |
Target: 5'- uGUGGaucuCCGGGG-GGUCGAUCUgcGCGGCc -3' miRNA: 3'- gCGCU----GGCCCCaCCGGCUAGA--UGUCG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 120898 | 0.66 | 0.769949 |
Target: 5'- cCGUGACCGGaaacucucccuGGUcaCCGGUCcGCGGCu -3' miRNA: 3'- -GCGCUGGCC-----------CCAccGGCUAGaUGUCG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 5344 | 0.66 | 0.769949 |
Target: 5'- cCGUGACCGGaaacucucccuGGUcaCCGGUCcGCGGCu -3' miRNA: 3'- -GCGCUGGCC-----------CCAccGGCUAGaUGUCG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 42789 | 0.67 | 0.716774 |
Target: 5'- aGCGAUCGGGGUuaucggcgcuccuauGGCCc-UUUugAGCc -3' miRNA: 3'- gCGCUGGCCCCA---------------CCGGcuAGAugUCG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 81414 | 0.68 | 0.643408 |
Target: 5'- uGCGACCGcucaGGUGGuuGAUgUGCcGUg -3' miRNA: 3'- gCGCUGGCc---CCACCggCUAgAUGuCG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 48172 | 0.69 | 0.603345 |
Target: 5'- uCGUGGCCGGGuugggGGCCGGguUCgACAGg -3' miRNA: 3'- -GCGCUGGCCCca---CCGGCU--AGaUGUCg -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 32595 | 0.69 | 0.603345 |
Target: 5'- uCGCGACCGGGacgGGC--GUUUACGGUc -3' miRNA: 3'- -GCGCUGGCCCca-CCGgcUAGAUGUCG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 78408 | 0.71 | 0.496022 |
Target: 5'- aCGCauuGugCGGGGUGuGCCGAUUUuuGGUu -3' miRNA: 3'- -GCG---CugGCCCCAC-CGGCUAGAugUCG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 30937 | 0.71 | 0.496022 |
Target: 5'- uGCGGCCGcGGUgacGGCgCGGUCgGCGGCc -3' miRNA: 3'- gCGCUGGCcCCA---CCG-GCUAGaUGUCG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 87269 | 0.71 | 0.486654 |
Target: 5'- uCGCGACCGGGuUGGUgGAaaUGCGGa -3' miRNA: 3'- -GCGCUGGCCCcACCGgCUagAUGUCg -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 91039 | 0.67 | 0.732255 |
Target: 5'- cCGCGGCCGccaaGGGUGGUUaugauaugaaaGAUCUGaucgaGGCc -3' miRNA: 3'- -GCGCUGGC----CCCACCGG-----------CUAGAUg----UCG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 50689 | 0.67 | 0.731294 |
Target: 5'- uCGCGGCCGuGGGUGGaCCuuUCUuuuuuguggugguGguGCu -3' miRNA: 3'- -GCGCUGGC-CCCACC-GGcuAGA-------------UguCG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 1984 | 0.68 | 0.683331 |
Target: 5'- uGUGGCCGucaaGGaGUGGCUG-UCUACGGa -3' miRNA: 3'- gCGCUGGC----CC-CACCGGCuAGAUGUCg -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 117538 | 0.68 | 0.683331 |
Target: 5'- uGUGGCCGucaaGGaGUGGCUG-UCUACGGa -3' miRNA: 3'- gCGCUGGC----CC-CACCGGCuAGAUGUCg -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 102227 | 0.69 | 0.633386 |
Target: 5'- gGCGGCCaGGGucgcGUGGCUGAUgaGCGcGCu -3' miRNA: 3'- gCGCUGG-CCC----CACCGGCUAgaUGU-CG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 3356 | 0.69 | 0.593362 |
Target: 5'- aGCG-CCGGGGUGGUgaucgaCGAUgUACAc- -3' miRNA: 3'- gCGCuGGCCCCACCG------GCUAgAUGUcg -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 118910 | 0.69 | 0.593362 |
Target: 5'- aGCG-CCGGGGUGGUgaucgaCGAUgUACAc- -3' miRNA: 3'- gCGCuGGCCCCACCG------GCUAgAUGUcg -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 64944 | 0.7 | 0.563605 |
Target: 5'- gCGCGAuaaCCGGGGUGcGCCgcguGAUCguccagAgGGCg -3' miRNA: 3'- -GCGCU---GGCCCCAC-CGG----CUAGa-----UgUCG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 48624 | 0.76 | 0.267241 |
Target: 5'- gGCGAUCGuGGGUGGCaCGGUCUugGuGUu -3' miRNA: 3'- gCGCUGGC-CCCACCG-GCUAGAugU-CG- -5' |
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2900 | 3' | -58.9 | NC_001493.1 | + | 12838 | 0.66 | 0.805759 |
Target: 5'- uCGCGuCCGGGGUcgGGgCGcUCgggauacucGCGGCg -3' miRNA: 3'- -GCGCuGGCCCCA--CCgGCuAGa--------UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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