miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2900 5' -54.6 NC_001493.1 + 19748 0.66 0.927196
Target:  5'- aGGgUACGCucCCGCGG-CACCGGGGa -3'
miRNA:   3'- cUUgAUGUGc-GGCGCUaGUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 13563 0.66 0.927196
Target:  5'- uGGGCccCACGaCCGCGcggccgCACaCGGGGCa -3'
miRNA:   3'- -CUUGauGUGC-GGCGCua----GUG-GCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 19604 0.66 0.921699
Target:  5'- gGAGCgUACcCuCCGCGAaaUACCGGGGCc -3'
miRNA:   3'- -CUUG-AUGuGcGGCGCUa-GUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 40104 0.67 0.915957
Target:  5'- --gUUACACGagcgggGUGAUUACUGGGGCa -3'
miRNA:   3'- cuuGAUGUGCgg----CGCUAGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 72473 0.67 0.915956
Target:  5'- gGGugUACGCGCUguggacagGCGGUCACgGAauucgGGUa -3'
miRNA:   3'- -CUugAUGUGCGG--------CGCUAGUGgCU-----CCG- -5'
2900 5' -54.6 NC_001493.1 + 39633 0.67 0.915956
Target:  5'- -cGCUG-ACGCCGauccCGAUCAgUCGGGGCc -3'
miRNA:   3'- cuUGAUgUGCGGC----GCUAGU-GGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 24004 0.67 0.914186
Target:  5'- cGAGCcAUAgaGCCGCcuucucggccucuaGAUCACgGGGGCg -3'
miRNA:   3'- -CUUGaUGUg-CGGCG--------------CUAGUGgCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 81789 0.67 0.90997
Target:  5'- uGGCUcGCGCGaCGgaGAucaUCACCGGGGCg -3'
miRNA:   3'- cUUGA-UGUGCgGCg-CU---AGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 103369 0.67 0.90997
Target:  5'- cGGugUugACGaCCGgGGUCG-CGGGGUa -3'
miRNA:   3'- -CUugAugUGC-GGCgCUAGUgGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 95568 0.67 0.90997
Target:  5'- cGugUACAUgaugaGCCGCGGUgauaucaucaCACCG-GGCg -3'
miRNA:   3'- cUugAUGUG-----CGGCGCUA----------GUGGCuCCG- -5'
2900 5' -54.6 NC_001493.1 + 95140 0.67 0.903742
Target:  5'- gGAAuCUGC-CGCCGCucguaGAUCcCCG-GGCg -3'
miRNA:   3'- -CUU-GAUGuGCGGCG-----CUAGuGGCuCCG- -5'
2900 5' -54.6 NC_001493.1 + 30880 0.67 0.903742
Target:  5'- uGGACccCACGCUG-GAUCGauUCGGGGCg -3'
miRNA:   3'- -CUUGauGUGCGGCgCUAGU--GGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 124025 0.67 0.901826
Target:  5'- cGGGCacgGCGCGCCacggagucacuccuGUGGcgccgCGCCGGGGCu -3'
miRNA:   3'- -CUUGa--UGUGCGG--------------CGCUa----GUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 8471 0.67 0.901826
Target:  5'- cGGGCacgGCGCGCCacggagucacuccuGUGGcgccgCGCCGGGGCu -3'
miRNA:   3'- -CUUGa--UGUGCGG--------------CGCUa----GUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 3255 0.67 0.897273
Target:  5'- gGAACcggGCACcgGCCGUGAcgagC-CCGAGGUg -3'
miRNA:   3'- -CUUGa--UGUG--CGGCGCUa---GuGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 118809 0.67 0.897273
Target:  5'- gGAACcggGCACcgGCCGUGAcgagC-CCGAGGUg -3'
miRNA:   3'- -CUUGa--UGUG--CGGCGCUa---GuGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 12406 0.67 0.890568
Target:  5'- uGGACcGCGC-CCGCGAUCGCUcaucauGGGGa -3'
miRNA:   3'- -CUUGaUGUGcGGCGCUAGUGG------CUCCg -5'
2900 5' -54.6 NC_001493.1 + 43925 0.67 0.890568
Target:  5'- uGAACUACcaccaacgaACGgccaUCGCGGagUCAUCGGGGCu -3'
miRNA:   3'- -CUUGAUG---------UGC----GGCGCU--AGUGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 65865 0.67 0.890568
Target:  5'- --uUUACgACGCgGCGGUCGCCGu-GCa -3'
miRNA:   3'- cuuGAUG-UGCGgCGCUAGUGGCucCG- -5'
2900 5' -54.6 NC_001493.1 + 127960 0.67 0.890568
Target:  5'- uGGACcGCGC-CCGCGAUCGCUcaucauGGGGa -3'
miRNA:   3'- -CUUGaUGUGcGGCGCUAGUGG------CUCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.