miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29000 3' -49.3 NC_006146.1 + 134206 0.66 0.999213
Target:  5'- cCCUUCgaugcauggucccccCUUAgUGGACuGCAGGC-CCa -3'
miRNA:   3'- -GGAAGa--------------GGAUgAUUUGuCGUCCGuGG- -5'
29000 3' -49.3 NC_006146.1 + 160041 0.66 0.999213
Target:  5'- cCCggCUCC-ACggugaugccgcagagGAGCGGCacagucAGGCACCu -3'
miRNA:   3'- -GGaaGAGGaUGa--------------UUUGUCG------UCCGUGG- -5'
29000 3' -49.3 NC_006146.1 + 109383 0.66 0.999197
Target:  5'- gCCaggUUUCUgaaugACaGGGCGGCAGGgGCCu -3'
miRNA:   3'- -GGa--AGAGGa----UGaUUUGUCGUCCgUGG- -5'
29000 3' -49.3 NC_006146.1 + 60712 0.66 0.999197
Target:  5'- uCCUggugUUCCUGCUGAuuga-GGGCAUCu -3'
miRNA:   3'- -GGAa---GAGGAUGAUUugucgUCCGUGG- -5'
29000 3' -49.3 NC_006146.1 + 109578 0.66 0.999016
Target:  5'- gCCUcg-CCgGCUAGGCcacccgGGCAGGaCGCCg -3'
miRNA:   3'- -GGAagaGGaUGAUUUG------UCGUCC-GUGG- -5'
29000 3' -49.3 NC_006146.1 + 117231 0.66 0.999016
Target:  5'- cCCgggCUuCCUGgaAAGCGGCcGGgGCCa -3'
miRNA:   3'- -GGaa-GA-GGAUgaUUUGUCGuCCgUGG- -5'
29000 3' -49.3 NC_006146.1 + 29623 0.66 0.998802
Target:  5'- gCCaaugCUCCcaGCUAAACugaaauuCAGGCGCCu -3'
miRNA:   3'- -GGaa--GAGGa-UGAUUUGuc-----GUCCGUGG- -5'
29000 3' -49.3 NC_006146.1 + 44961 0.66 0.998802
Target:  5'- cCCUUCUCCUgGCUccgcaAGACcuCGuGCGCCg -3'
miRNA:   3'- -GGAAGAGGA-UGA-----UUUGucGUcCGUGG- -5'
29000 3' -49.3 NC_006146.1 + 7006 0.66 0.998802
Target:  5'- gCUUCaUCCUgcacaACUAAGCAGaggauGGCAUg -3'
miRNA:   3'- gGAAG-AGGA-----UGAUUUGUCgu---CCGUGg -5'
29000 3' -49.3 NC_006146.1 + 102551 0.66 0.998549
Target:  5'- --aUCUCCacagagGCguccAGCAGCAGGUccgaGCCg -3'
miRNA:   3'- ggaAGAGGa-----UGau--UUGUCGUCCG----UGG- -5'
29000 3' -49.3 NC_006146.1 + 42752 0.66 0.998549
Target:  5'- --aUCgCCUGCg--GCAGCAGG-GCCg -3'
miRNA:   3'- ggaAGaGGAUGauuUGUCGUCCgUGG- -5'
29000 3' -49.3 NC_006146.1 + 149403 0.66 0.998549
Target:  5'- ---aCUUCUGgUAGACGGCcaggugAGGCAUCu -3'
miRNA:   3'- ggaaGAGGAUgAUUUGUCG------UCCGUGG- -5'
29000 3' -49.3 NC_006146.1 + 128645 0.66 0.998549
Target:  5'- uCCUcCUCCcGCauucggGGACGGCGGGgACg -3'
miRNA:   3'- -GGAaGAGGaUGa-----UUUGUCGUCCgUGg -5'
29000 3' -49.3 NC_006146.1 + 57593 0.66 0.998549
Target:  5'- cCCUUUUCCUucccACUuuuguccCGGUGGGgGCCa -3'
miRNA:   3'- -GGAAGAGGA----UGAuuu----GUCGUCCgUGG- -5'
29000 3' -49.3 NC_006146.1 + 92069 0.66 0.998549
Target:  5'- gCCUggggCUgCUGCUGGGgGGC-GGC-CCg -3'
miRNA:   3'- -GGAa---GAgGAUGAUUUgUCGuCCGuGG- -5'
29000 3' -49.3 NC_006146.1 + 64817 0.66 0.998549
Target:  5'- uUCUguagCUCCUGC---GCAGCucguguuuGGGCugCa -3'
miRNA:   3'- -GGAa---GAGGAUGauuUGUCG--------UCCGugG- -5'
29000 3' -49.3 NC_006146.1 + 126927 0.66 0.998252
Target:  5'- gCCUccUCUCCcGCU-GGCAGgAuGGCGCUc -3'
miRNA:   3'- -GGA--AGAGGaUGAuUUGUCgU-CCGUGG- -5'
29000 3' -49.3 NC_006146.1 + 155120 0.67 0.99805
Target:  5'- aCCUUCUgguggggcaagguccCCgcgGCgucgcAGCAGCGGGCcaggGCCa -3'
miRNA:   3'- -GGAAGA---------------GGa--UGau---UUGUCGUCCG----UGG- -5'
29000 3' -49.3 NC_006146.1 + 63590 0.67 0.997906
Target:  5'- gUCUUacaUUCUUAUUGaAGCAGguGGCACa -3'
miRNA:   3'- -GGAA---GAGGAUGAU-UUGUCguCCGUGg -5'
29000 3' -49.3 NC_006146.1 + 128180 0.67 0.997906
Target:  5'- cCCggaUCCgcgGCUGccAGCccgAGCGGGCGCUg -3'
miRNA:   3'- -GGaagAGGa--UGAU--UUG---UCGUCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.