miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29000 5' -53.7 NC_006146.1 + 170609 0.66 0.966432
Target:  5'- ---cGGCCUUC-CUUcGCUGAGCGGCAu -3'
miRNA:   3'- acccCCGGAAGaGGA-UGAUUUGUCGU- -5'
29000 5' -53.7 NC_006146.1 + 114572 0.66 0.966432
Target:  5'- cGGGcGGCCUcCUUCUcGCggcGCAGCu -3'
miRNA:   3'- aCCC-CCGGAaGAGGA-UGauuUGUCGu -5'
29000 5' -53.7 NC_006146.1 + 61288 0.66 0.966432
Target:  5'- cGGGGGCCUgucgCgugUUUGCggcgcGCGGCGu -3'
miRNA:   3'- aCCCCCGGAa---Ga--GGAUGauu--UGUCGU- -5'
29000 5' -53.7 NC_006146.1 + 41402 0.66 0.96308
Target:  5'- aGGuGGGCCUgaUgUCCgcCUGGGgGGCAc -3'
miRNA:   3'- aCC-CCCGGA--AgAGGauGAUUUgUCGU- -5'
29000 5' -53.7 NC_006146.1 + 108538 0.66 0.959502
Target:  5'- -aGGGGCC-UCUCCgGC---GCGGCGu -3'
miRNA:   3'- acCCCCGGaAGAGGaUGauuUGUCGU- -5'
29000 5' -53.7 NC_006146.1 + 45050 0.66 0.951646
Target:  5'- -cGGGGCCggCUCCcuagGGGCGGCu -3'
miRNA:   3'- acCCCCGGaaGAGGaugaUUUGUCGu -5'
29000 5' -53.7 NC_006146.1 + 64577 0.66 0.951646
Target:  5'- aGGGGGCCagCUCCU--UGAGCuuuGUc -3'
miRNA:   3'- aCCCCCGGaaGAGGAugAUUUGu--CGu -5'
29000 5' -53.7 NC_006146.1 + 159627 0.67 0.94736
Target:  5'- cUGGGGcacGCCUUCcgggaacaccUCCUugUcguACAGCGg -3'
miRNA:   3'- -ACCCC---CGGAAG----------AGGAugAuu-UGUCGU- -5'
29000 5' -53.7 NC_006146.1 + 149974 0.67 0.94736
Target:  5'- gUGGGGGCCagggCCUGCagguCGGCc -3'
miRNA:   3'- -ACCCCCGGaagaGGAUGauuuGUCGu -5'
29000 5' -53.7 NC_006146.1 + 117798 0.67 0.94736
Target:  5'- gGGccGGGCCgcCUCCggACUAGACGGa- -3'
miRNA:   3'- aCC--CCCGGaaGAGGa-UGAUUUGUCgu -5'
29000 5' -53.7 NC_006146.1 + 71876 0.67 0.94736
Target:  5'- gGGGGGCCUcuacacggccgUCacgcggacccUCCUGCgc-GCGGCc -3'
miRNA:   3'- aCCCCCGGA-----------AG----------AGGAUGauuUGUCGu -5'
29000 5' -53.7 NC_006146.1 + 60967 0.67 0.94736
Target:  5'- cGaGGGGCCUaCUCCgAUaAGGCGGUg -3'
miRNA:   3'- aC-CCCCGGAaGAGGaUGaUUUGUCGu -5'
29000 5' -53.7 NC_006146.1 + 77980 0.67 0.938053
Target:  5'- uUGGaGGuGCCggucCUCuCUGuCUGGACAGCAc -3'
miRNA:   3'- -ACC-CC-CGGaa--GAG-GAU-GAUUUGUCGU- -5'
29000 5' -53.7 NC_006146.1 + 50181 0.67 0.938053
Target:  5'- aUGGGGGUgaUCUCCcggaucaggUGCUGcucCAGCGu -3'
miRNA:   3'- -ACCCCCGgaAGAGG---------AUGAUuu-GUCGU- -5'
29000 5' -53.7 NC_006146.1 + 36309 0.67 0.933028
Target:  5'- cGGcuGGCCUUCU-UUACUGAGgGGCAa -3'
miRNA:   3'- aCCc-CCGGAAGAgGAUGAUUUgUCGU- -5'
29000 5' -53.7 NC_006146.1 + 156693 0.67 0.92223
Target:  5'- cUGGGGGUCgggCUggCCUGCcAGGgGGCAa -3'
miRNA:   3'- -ACCCCCGGaa-GA--GGAUGaUUUgUCGU- -5'
29000 5' -53.7 NC_006146.1 + 141304 0.67 0.92223
Target:  5'- cUGGGGGUCgggCUggCCUGCcAGGgGGCAa -3'
miRNA:   3'- -ACCCCCGGaa-GA--GGAUGaUUUgUCGU- -5'
29000 5' -53.7 NC_006146.1 + 144382 0.67 0.92223
Target:  5'- cUGGGGGUCgggCUggCCUGCcAGGgGGCAa -3'
miRNA:   3'- -ACCCCCGGaa-GA--GGAUGaUUUgUCGU- -5'
29000 5' -53.7 NC_006146.1 + 147460 0.67 0.92223
Target:  5'- cUGGGGGUCgggCUggCCUGCcAGGgGGCAa -3'
miRNA:   3'- -ACCCCCGGaa-GA--GGAUGaUUUgUCGU- -5'
29000 5' -53.7 NC_006146.1 + 150538 0.67 0.92223
Target:  5'- cUGGGGGUCgggCUggCCUGCcAGGgGGCAa -3'
miRNA:   3'- -ACCCCCGGaa-GA--GGAUGaUUUgUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.