miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29001 3' -56.3 NC_006146.1 + 131465 0.66 0.896033
Target:  5'- aGCAGGGCCcagugcacccagguGGGUCugGGGuGCCAGGg-- -3'
miRNA:   3'- -CGUUCCGGu-------------UUCGG--UCC-CGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 156813 0.66 0.893364
Target:  5'- --cGGGCCugggguGGCCGGGGagGGGUg- -3'
miRNA:   3'- cguUCCGGuu----UCGGUCCCggUCCAau -5'
29001 3' -56.3 NC_006146.1 + 164478 0.66 0.893364
Target:  5'- cCAGGGCCcacauGGCCcuGGGCCAaaGGg-- -3'
miRNA:   3'- cGUUCCGGuu---UCGGu-CCCGGU--CCaau -5'
29001 3' -56.3 NC_006146.1 + 118259 0.66 0.893364
Target:  5'- -gGGGGCCAGAGCCcauguucucGGCCcGGUc- -3'
miRNA:   3'- cgUUCCGGUUUCGGuc-------CCGGuCCAau -5'
29001 3' -56.3 NC_006146.1 + 49480 0.66 0.893364
Target:  5'- -gAGGGCCGcggugucGGCCAGGGgCGGcGUg- -3'
miRNA:   3'- cgUUCCGGUu------UCGGUCCCgGUC-CAau -5'
29001 3' -56.3 NC_006146.1 + 165463 0.66 0.893364
Target:  5'- ---uGGCCAguaggaAGGCCAGGcagaagGCCAGGa-- -3'
miRNA:   3'- cguuCCGGU------UUCGGUCC------CGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 156598 0.66 0.893364
Target:  5'- aGCAGGugcGCCAGcuCCAGGGaCAGGg-- -3'
miRNA:   3'- -CGUUC---CGGUUucGGUCCCgGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 14809 0.66 0.893364
Target:  5'- -aGAGGCC--GGCC-GGGCCGGa--- -3'
miRNA:   3'- cgUUCCGGuuUCGGuCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 20706 0.66 0.893364
Target:  5'- cGCAAGGCCAuuaagAAGCUgcuGGcGGCCugcgAGGa-- -3'
miRNA:   3'- -CGUUCCGGU-----UUCGG---UC-CCGG----UCCaau -5'
29001 3' -56.3 NC_006146.1 + 153735 0.66 0.893364
Target:  5'- --cGGGCCugggguGGCCGGGGagGGGUg- -3'
miRNA:   3'- cguUCCGGuu----UCGGUCCCggUCCAau -5'
29001 3' -56.3 NC_006146.1 + 150658 0.66 0.893364
Target:  5'- --cGGGCCugggguGGCCGGGGagGGGUg- -3'
miRNA:   3'- cguUCCGGuu----UCGGUCCCggUCCAau -5'
29001 3' -56.3 NC_006146.1 + 147580 0.66 0.893364
Target:  5'- --cGGGCCugggguGGCCGGGGagGGGUg- -3'
miRNA:   3'- cguUCCGGuu----UCGGUCCCggUCCAau -5'
29001 3' -56.3 NC_006146.1 + 144502 0.66 0.893364
Target:  5'- --cGGGCCugggguGGCCGGGGagGGGUg- -3'
miRNA:   3'- cguUCCGGuu----UCGGUCCCggUCCAau -5'
29001 3' -56.3 NC_006146.1 + 141424 0.66 0.893364
Target:  5'- --cGGGCCugggguGGCCGGGGagGGGUg- -3'
miRNA:   3'- cguUCCGGuu----UCGGUCCCggUCCAau -5'
29001 3' -56.3 NC_006146.1 + 139571 0.66 0.891337
Target:  5'- -uGAGGCCuguAAGCCcaaugaggcugcggGGGGCgAGGa-- -3'
miRNA:   3'- cgUUCCGGu--UUCGG--------------UCCCGgUCCaau -5'
29001 3' -56.3 NC_006146.1 + 12639 0.66 0.88929
Target:  5'- gGCuGGGCCAGAGUCcccccgaguggcucaAGGGCCAc---- -3'
miRNA:   3'- -CGuUCCGGUUUCGG---------------UCCCGGUccaau -5'
29001 3' -56.3 NC_006146.1 + 554 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 1485 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 2417 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 3349 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.