miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29001 3' -56.3 NC_006146.1 + 31948 1.09 0.002458
Target:  5'- gGCAAGGCCAAAGCCAGGGCCAGGUUAg -3'
miRNA:   3'- -CGUUCCGGUUUCGGUCCCGGUCCAAU- -5'
29001 3' -56.3 NC_006146.1 + 151295 0.81 0.170891
Target:  5'- -gAAGGCCAGGGCCguguaggAGGGCCAGGa-- -3'
miRNA:   3'- cgUUCCGGUUUCGG-------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 157723 0.81 0.18494
Target:  5'- aGCGAGGCCGggcAGGCCGGgcaGGCCGGGUc- -3'
miRNA:   3'- -CGUUCCGGU---UUCGGUC---CCGGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 154646 0.81 0.18494
Target:  5'- aGCGAGGCCGggcAGGCCGGgcaGGCCGGGUc- -3'
miRNA:   3'- -CGUUCCGGU---UUCGGUC---CCGGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 148490 0.81 0.18494
Target:  5'- aGCGAGGCCGggcAGGCCGGgcaGGCCGGGUc- -3'
miRNA:   3'- -CGUUCCGGU---UUCGGUC---CCGGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 145412 0.81 0.18494
Target:  5'- aGCGAGGCCGggcAGGCCGGgcaGGCCGGGUc- -3'
miRNA:   3'- -CGUUCCGGU---UUCGGUC---CCGGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 142334 0.81 0.18494
Target:  5'- aGCGAGGCCGggcAGGCCGGgcaGGCCGGGUc- -3'
miRNA:   3'- -CGUUCCGGU---UUCGGUC---CCGGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 151568 0.81 0.18494
Target:  5'- aGCGAGGCCGggcAGGCCGGgcaGGCCGGGUc- -3'
miRNA:   3'- -CGUUCCGGU---UUCGGUC---CCGGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 64626 0.8 0.204567
Target:  5'- gGCGcAGGCCAGGaggaugucuuccGCCGGGGCCAGGg-- -3'
miRNA:   3'- -CGU-UCCGGUUU------------CGGUCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 56220 0.8 0.204567
Target:  5'- uGCAGGGCCuGGGUCuGGGUCAGGUa- -3'
miRNA:   3'- -CGUUCCGGuUUCGGuCCCGGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 170196 0.79 0.225973
Target:  5'- gGCGGGGCCGGGGCCuggcgGGGGCCAGc--- -3'
miRNA:   3'- -CGUUCCGGUUUCGG-----UCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 168333 0.79 0.225973
Target:  5'- gGCGGGGCCGGGGCCuggcgGGGGCCAGc--- -3'
miRNA:   3'- -CGUUCCGGUUUCGG-----UCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 169265 0.79 0.225973
Target:  5'- gGCGGGGCCGGGGCCuggcgGGGGCCAGc--- -3'
miRNA:   3'- -CGUUCCGGUUUCGG-----UCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 167401 0.79 0.225973
Target:  5'- gGCGGGGCCGGGGCCuggcgGGGGCCAGc--- -3'
miRNA:   3'- -CGUUCCGGUUUCGG-----UCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 23467 0.79 0.249248
Target:  5'- aCGAGGCCcuGGCCGuGGCCAGGUa- -3'
miRNA:   3'- cGUUCCGGuuUCGGUcCCGGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 148729 0.78 0.274468
Target:  5'- cCAAGGCCAccGGgCGGGGCCAGGg-- -3'
miRNA:   3'- cGUUCCGGUu-UCgGUCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 157963 0.78 0.274468
Target:  5'- cCAAGGCCAccGGgCGGGGCCAGGg-- -3'
miRNA:   3'- cGUUCCGGUu-UCgGUCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 145652 0.78 0.274468
Target:  5'- cCAAGGCCAccGGgCGGGGCCAGGg-- -3'
miRNA:   3'- cGUUCCGGUu-UCgGUCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 151807 0.78 0.274468
Target:  5'- cCAAGGCCAccGGgCGGGGCCAGGg-- -3'
miRNA:   3'- cGUUCCGGUu-UCgGUCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 154885 0.78 0.274468
Target:  5'- cCAAGGCCAccGGgCGGGGCCAGGg-- -3'
miRNA:   3'- cGUUCCGGUu-UCgGUCCCGGUCCaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.