miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29001 3' -56.3 NC_006146.1 + 89974 0.66 0.886528
Target:  5'- --uGGGCCu-GGCU-GGGCCGGGa-- -3'
miRNA:   3'- cguUCCGGuuUCGGuCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 109594 0.66 0.886528
Target:  5'- aGCAcuuGGaCAGgacGGCCAGGGCCuuGGUc- -3'
miRNA:   3'- -CGUu--CCgGUU---UCGGUCCCGGu-CCAau -5'
29001 3' -56.3 NC_006146.1 + 111900 0.66 0.886528
Target:  5'- gGCAGcGCgGGAGgCAGauguuGGCCAGGUUGc -3'
miRNA:   3'- -CGUUcCGgUUUCgGUC-----CCGGUCCAAU- -5'
29001 3' -56.3 NC_006146.1 + 18261 0.66 0.886528
Target:  5'- ----aGCCugggGAGCguGGGUCAGGUUAu -3'
miRNA:   3'- cguucCGGu---UUCGguCCCGGUCCAAU- -5'
29001 3' -56.3 NC_006146.1 + 3349 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 2417 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 1485 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 554 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 157269 0.66 0.886528
Target:  5'- -aGAGGCUgcuGGGGaCCAGGGCCuccuGGg-- -3'
miRNA:   3'- cgUUCCGG---UUUC-GGUCCCGGu---CCaau -5'
29001 3' -56.3 NC_006146.1 + 154191 0.66 0.886528
Target:  5'- -aGAGGCUgcuGGGGaCCAGGGCCuccuGGg-- -3'
miRNA:   3'- cgUUCCGG---UUUC-GGUCCCGGu---CCaau -5'
29001 3' -56.3 NC_006146.1 + 151113 0.66 0.886528
Target:  5'- -aGAGGCUgcuGGGGaCCAGGGCCuccuGGg-- -3'
miRNA:   3'- cgUUCCGG---UUUC-GGUCCCGGu---CCaau -5'
29001 3' -56.3 NC_006146.1 + 148035 0.66 0.886528
Target:  5'- -aGAGGCUgcuGGGGaCCAGGGCCuccuGGg-- -3'
miRNA:   3'- cgUUCCGG---UUUC-GGUCCCGGu---CCaau -5'
29001 3' -56.3 NC_006146.1 + 144957 0.66 0.886528
Target:  5'- -aGAGGCUgcuGGGGaCCAGGGCCuccuGGg-- -3'
miRNA:   3'- cgUUCCGG---UUUC-GGUCCCGGu---CCaau -5'
29001 3' -56.3 NC_006146.1 + 141879 0.66 0.886528
Target:  5'- -aGAGGCUgcuGGGGaCCAGGGCCuccuGGg-- -3'
miRNA:   3'- cgUUCCGG---UUUC-GGUCCCGGu---CCaau -5'
29001 3' -56.3 NC_006146.1 + 77546 0.66 0.884432
Target:  5'- --cGGGCCAcguguacguggcgcuGuCCAGGGCCAGGc-- -3'
miRNA:   3'- cguUCCGGUuu-------------C-GGUCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 60461 0.66 0.884432
Target:  5'- aGCGgcAGGCCGcggggagcggugagAGGCCggGGGGCCAGc--- -3'
miRNA:   3'- -CGU--UCCGGU--------------UUCGG--UCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 122615 0.66 0.879461
Target:  5'- gGCGagGGGCgGAggaGGCCGGGGCCcucuuucgcgccAGGa-- -3'
miRNA:   3'- -CGU--UCCGgUU---UCGGUCCCGG------------UCCaau -5'
29001 3' -56.3 NC_006146.1 + 25070 0.66 0.879461
Target:  5'- cCGAGGUUGGAGCCGGcGGgcgccaCCAGGUc- -3'
miRNA:   3'- cGUUCCGGUUUCGGUC-CC------GGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 28148 0.66 0.879461
Target:  5'- cCGAGGUUGGAGCCGGcGGgcgccaCCAGGUc- -3'
miRNA:   3'- cGUUCCGGUUUCGGUC-CC------GGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 14758 0.66 0.879461
Target:  5'- aCGAGGUCAGgcAGgCGGGGCuCGGGc-- -3'
miRNA:   3'- cGUUCCGGUU--UCgGUCCCG-GUCCaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.