miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29001 3' -56.3 NC_006146.1 + 554 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 1485 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 1837 0.66 0.856931
Target:  5'- gGCGGGGCac-AGCCGGGuGCCacAGGc-- -3'
miRNA:   3'- -CGUUCCGguuUCGGUCC-CGG--UCCaau -5'
29001 3' -56.3 NC_006146.1 + 2417 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 3349 0.66 0.886528
Target:  5'- cGC-GGGCCuccacacguGGCCucccaggagaGGGGCCGGGg-- -3'
miRNA:   3'- -CGuUCCGGuu-------UCGG----------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 6429 0.67 0.83253
Target:  5'- cCAGGGCCAuguGGGCCcuGGGGuCCAuGGg-- -3'
miRNA:   3'- cGUUCCGGU---UUCGG--UCCC-GGU-CCaau -5'
29001 3' -56.3 NC_006146.1 + 10720 0.66 0.871428
Target:  5'- gGCGAGgauaaucugggcaGCCAGagccAGCCGGGGCCAugcGGc-- -3'
miRNA:   3'- -CGUUC-------------CGGUU----UCGGUCCCGGU---CCaau -5'
29001 3' -56.3 NC_006146.1 + 12611 0.67 0.84086
Target:  5'- uCGAGGCCucacAGCCcaGGCCAGGc-- -3'
miRNA:   3'- cGUUCCGGuu--UCGGucCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 12639 0.66 0.88929
Target:  5'- gGCuGGGCCAGAGUCcccccgaguggcucaAGGGCCAc---- -3'
miRNA:   3'- -CGuUCCGGUUUCGG---------------UCCCGGUccaau -5'
29001 3' -56.3 NC_006146.1 + 12711 0.66 0.87217
Target:  5'- -aGAGGCCcgcGGCCauuGGGGCCAGc--- -3'
miRNA:   3'- cgUUCCGGuu-UCGG---UCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 12758 0.66 0.879461
Target:  5'- cCGAGGUUGGAGCCGGcGGgcgccaCCAGGUc- -3'
miRNA:   3'- cGUUCCGGUUUCGGUC-CC------GGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 12865 0.71 0.638545
Target:  5'- gGCGAGGCUGGguGGCUGGgcaGGCCGGGUc- -3'
miRNA:   3'- -CGUUCCGGUU--UCGGUC---CCGGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 13553 0.68 0.759876
Target:  5'- uGCAGGcGCCGGGcGCCGGGcugcgcaagcagGCCGGGg-- -3'
miRNA:   3'- -CGUUC-CGGUUU-CGGUCC------------CGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 14340 0.75 0.378645
Target:  5'- cGCAGGGCCGuugcGGCCcugcugguGGGGUCGGGUc- -3'
miRNA:   3'- -CGUUCCGGUu---UCGG--------UCCCGGUCCAau -5'
29001 3' -56.3 NC_006146.1 + 14758 0.66 0.879461
Target:  5'- aCGAGGUCAGgcAGgCGGGGCuCGGGc-- -3'
miRNA:   3'- cGUUCCGGUU--UCgGUCCCG-GUCCaau -5'
29001 3' -56.3 NC_006146.1 + 14809 0.66 0.893364
Target:  5'- -aGAGGCC--GGCC-GGGCCGGa--- -3'
miRNA:   3'- cgUUCCGGuuUCGGuCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 14847 0.66 0.864658
Target:  5'- cCGGGGCCGcgggAGGCCgAGGgggcaGCCAGGg-- -3'
miRNA:   3'- cGUUCCGGU----UUCGG-UCC-----CGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 15038 0.7 0.690077
Target:  5'- cGCcuGGCCAGGGCCcgccGGGCCugcgAGGa-- -3'
miRNA:   3'- -CGuuCCGGUUUCGGu---CCCGG----UCCaau -5'
29001 3' -56.3 NC_006146.1 + 15690 0.67 0.84086
Target:  5'- uCGAGGCCucacAGCCcaGGCCAGGc-- -3'
miRNA:   3'- cGUUCCGGuu--UCGGucCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 15790 0.66 0.87217
Target:  5'- -aGAGGCCcgcGGCCauuGGGGCCAGc--- -3'
miRNA:   3'- cgUUCCGGuu-UCGG---UCCCGGUCcaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.