miRNA display CGI


Results 1 - 20 of 289 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29001 3' -56.3 NC_006146.1 + 31948 1.09 0.002458
Target:  5'- gGCAAGGCCAAAGCCAGGGCCAGGUUAg -3'
miRNA:   3'- -CGUUCCGGUUUCGGUCCCGGUCCAAU- -5'
29001 3' -56.3 NC_006146.1 + 147708 0.72 0.546089
Target:  5'- aCAGGGCCAggaAGGCggCGGGGCCuGGGUa- -3'
miRNA:   3'- cGUUCCGGU---UUCG--GUCCCGG-UCCAau -5'
29001 3' -56.3 NC_006146.1 + 130316 0.72 0.556211
Target:  5'- gGUucGGCCGc--CCAGGGCCAGGa-- -3'
miRNA:   3'- -CGuuCCGGUuucGGUCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 131465 0.66 0.896033
Target:  5'- aGCAGGGCCcagugcacccagguGGGUCugGGGuGCCAGGg-- -3'
miRNA:   3'- -CGUUCCGGu-------------UUCGG--UCC-CGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 168333 0.79 0.225973
Target:  5'- gGCGGGGCCGGGGCCuggcgGGGGCCAGc--- -3'
miRNA:   3'- -CGUUCCGGUUUCGG-----UCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 169265 0.79 0.225973
Target:  5'- gGCGGGGCCGGGGCCuggcgGGGGCCAGc--- -3'
miRNA:   3'- -CGUUCCGGUUUCGG-----UCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 75040 0.77 0.301691
Target:  5'- cCGGGGCCAguacaggaucugGAGCCGGGGCCAGu--- -3'
miRNA:   3'- cGUUCCGGU------------UUCGGUCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 75112 0.77 0.301691
Target:  5'- cCGGGGCCAguacaggaucugGAGCCGGGGCCAGu--- -3'
miRNA:   3'- cGUUCCGGU------------UUCGGUCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 106204 0.75 0.404162
Target:  5'- --cGGGCCuccuGCCAGGGCCuGGUg- -3'
miRNA:   3'- cguUCCGGuuu-CGGUCCCGGuCCAau -5'
29001 3' -56.3 NC_006146.1 + 47399 0.73 0.52603
Target:  5'- -uGGGGUCGAccguGGCCAGGGCCAGc--- -3'
miRNA:   3'- cgUUCCGGUU----UCGGUCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 146826 0.74 0.43074
Target:  5'- gGCGAGGCCGcgccagcguaGAGCCcGGGCCuGGc-- -3'
miRNA:   3'- -CGUUCCGGU----------UUCGGuCCCGGuCCaau -5'
29001 3' -56.3 NC_006146.1 + 53473 0.76 0.354231
Target:  5'- cGCGGGuGCCucgucGGUCAGGGCCGGGg-- -3'
miRNA:   3'- -CGUUC-CGGuu---UCGGUCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 151295 0.81 0.170891
Target:  5'- -gAAGGCCAGGGCCguguaggAGGGCCAGGa-- -3'
miRNA:   3'- cgUUCCGGUUUCGG-------UCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 129141 0.73 0.506254
Target:  5'- cGCAGGGCCuccggcggGAAGCCcacccgucucAGGGCCcGGUa- -3'
miRNA:   3'- -CGUUCCGG--------UUUCGG----------UCCCGGuCCAau -5'
29001 3' -56.3 NC_006146.1 + 64626 0.8 0.204567
Target:  5'- gGCGcAGGCCAGGaggaugucuuccGCCGGGGCCAGGg-- -3'
miRNA:   3'- -CGU-UCCGGUUU------------CGGUCCCGGUCCaau -5'
29001 3' -56.3 NC_006146.1 + 45412 0.77 0.323443
Target:  5'- cGguGGGCCAgcgcgAGGCCccGGCCGGGUUGa -3'
miRNA:   3'- -CguUCCGGU-----UUCGGucCCGGUCCAAU- -5'
29001 3' -56.3 NC_006146.1 + 147434 0.73 0.516104
Target:  5'- cGUAccuGGCCAcGGCCAGGGCCucGUa- -3'
miRNA:   3'- -CGUu--CCGGUuUCGGUCCCGGucCAau -5'
29001 3' -56.3 NC_006146.1 + 55040 0.72 0.546089
Target:  5'- -gGGGGUCGGGGCCGGGGCCugccacAGGc-- -3'
miRNA:   3'- cgUUCCGGUUUCGGUCCCGG------UCCaau -5'
29001 3' -56.3 NC_006146.1 + 167401 0.79 0.225973
Target:  5'- gGCGGGGCCGGGGCCuggcgGGGGCCAGc--- -3'
miRNA:   3'- -CGUUCCGGUUUCGG-----UCCCGGUCcaau -5'
29001 3' -56.3 NC_006146.1 + 170196 0.79 0.225973
Target:  5'- gGCGGGGCCGGGGCCuggcgGGGGCCAGc--- -3'
miRNA:   3'- -CGUUCCGGUUUCGG-----UCCCGGUCcaau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.