miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 3' -56.7 NC_006146.1 + 169545 0.66 0.908476
Target:  5'- cGCGaCCCGAggggcgAGCgggggGCUu-CCCCGGGg -3'
miRNA:   3'- -CGC-GGGUUa-----UCGag---UGGuuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 168613 0.66 0.908476
Target:  5'- cGCGaCCCGAggggcgAGCgggggGCUu-CCCCGGGg -3'
miRNA:   3'- -CGC-GGGUUa-----UCGag---UGGuuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 117298 0.66 0.908476
Target:  5'- -gGCCCGGU-GCcgCGCCcuuuCCCCGGc -3'
miRNA:   3'- cgCGGGUUAuCGa-GUGGuu--GGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 169726 0.66 0.908476
Target:  5'- gGCGCUCAGaucGGCgcgggggAGCCCCGGGg -3'
miRNA:   3'- -CGCGGGUUa--UCGagugg--UUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 167680 0.66 0.908476
Target:  5'- cGCGaCCCGAggggcgAGCgggggGCUu-CCCCGGGg -3'
miRNA:   3'- -CGC-GGGUUa-----UCGag---UGGuuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 167862 0.66 0.908476
Target:  5'- gGCGCUCAGaucGGCgcgggggAGCCCCGGGg -3'
miRNA:   3'- -CGCGGGUUa--UCGagugg--UUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 118956 0.66 0.908476
Target:  5'- gGCGCCaguUGGCgCGCaGACCgcaCCGGGg -3'
miRNA:   3'- -CGCGGguuAUCGaGUGgUUGG---GGCCC- -5'
29002 3' -56.7 NC_006146.1 + 101838 0.66 0.908476
Target:  5'- gGgGCCCGAgcGCUCgggcuGCCGcACCaCGGGu -3'
miRNA:   3'- -CgCGGGUUauCGAG-----UGGU-UGGgGCCC- -5'
29002 3' -56.7 NC_006146.1 + 9477 0.66 0.908476
Target:  5'- cGCGCCCucUGGC--AUCAGCCaCUGGa -3'
miRNA:   3'- -CGCGGGuuAUCGagUGGUUGG-GGCCc -5'
29002 3' -56.7 NC_006146.1 + 3047 0.66 0.908476
Target:  5'- cGCGCCgAucugAGCgccCACCcgugaggggGAgCCCGGGa -3'
miRNA:   3'- -CGCGGgUua--UCGa--GUGG---------UUgGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 2115 0.66 0.908476
Target:  5'- cGCGCCgAucugAGCgccCACCcgugaggggGAgCCCGGGa -3'
miRNA:   3'- -CGCGGgUua--UCGa--GUGG---------UUgGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 1183 0.66 0.908476
Target:  5'- cGCGCCgAucugAGCgccCACCcgugaggggGAgCCCGGGa -3'
miRNA:   3'- -CGCGGgUua--UCGa--GUGG---------UUgGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 158467 0.66 0.908476
Target:  5'- gGCGCCU---GGCUCAuguguCCAGa-CCGGGa -3'
miRNA:   3'- -CGCGGGuuaUCGAGU-----GGUUggGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 155388 0.66 0.908476
Target:  5'- gGCGCCU---GGCUCAuguguCCAGa-CCGGGa -3'
miRNA:   3'- -CGCGGGuuaUCGAGU-----GGUUggGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 152310 0.66 0.908476
Target:  5'- gGCGCCU---GGCUCAuguguCCAGa-CCGGGa -3'
miRNA:   3'- -CGCGGGuuaUCGAGU-----GGUUggGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 149232 0.66 0.908476
Target:  5'- gGCGCCU---GGCUCAuguguCCAGa-CCGGGa -3'
miRNA:   3'- -CGCGGGuuaUCGAGU-----GGUUggGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 146154 0.66 0.908476
Target:  5'- gGCGCCU---GGCUCAuguguCCAGa-CCGGGa -3'
miRNA:   3'- -CGCGGGuuaUCGAGU-----GGUUggGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 143076 0.66 0.908476
Target:  5'- gGCGCCU---GGCUCAuguguCCAGa-CCGGGa -3'
miRNA:   3'- -CGCGGGuuaUCGAGU-----GGUUggGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 137547 0.66 0.908476
Target:  5'- gGCGgaCCCAccGGCggcCACCcggcuGCCCCGGa -3'
miRNA:   3'- -CGC--GGGUuaUCGa--GUGGu----UGGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 124123 0.66 0.902392
Target:  5'- cGCGCCgGccGGCcaGCCAuccGCCCgGGGu -3'
miRNA:   3'- -CGCGGgUuaUCGagUGGU---UGGGgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.