miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 5' -55.3 NC_006146.1 + 168578 0.68 0.832921
Target:  5'- -gCCCGGCGCGUGcCGGGggAcCCGGg -3'
miRNA:   3'- gaGGGUCGUGCAUcGUCCaaUcGGUC- -5'
29002 5' -55.3 NC_006146.1 + 9069 0.68 0.841207
Target:  5'- uCUCCCacGGgGCGUGGCccaaaAGGaaAGCCGGg -3'
miRNA:   3'- -GAGGG--UCgUGCAUCG-----UCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 21972 0.68 0.857193
Target:  5'- aUUCCAGCcgagaaGUGGCGGGgaAGCUGGu -3'
miRNA:   3'- gAGGGUCGug----CAUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 110094 0.68 0.864879
Target:  5'- gUCCCuGCuuAUGUAGUu-GUUGGCCAGg -3'
miRNA:   3'- gAGGGuCG--UGCAUCGucCAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 157604 0.69 0.806983
Target:  5'- -gCCCAGCACGUGG-GGG-UAGUCGc -3'
miRNA:   3'- gaGGGUCGUGCAUCgUCCaAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 71163 0.69 0.788873
Target:  5'- --aCCGGCACuGUGGCuuGGGUgguggUAGCCGGu -3'
miRNA:   3'- gagGGUCGUG-CAUCG--UCCA-----AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 106405 0.69 0.788873
Target:  5'- -gCCUcGCAgCGUGGCcGGUUGGCCGa -3'
miRNA:   3'- gaGGGuCGU-GCAUCGuCCAAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 23964 0.69 0.82445
Target:  5'- -cCCCGGguCG-GGUGGGggAGCCGGa -3'
miRNA:   3'- gaGGGUCguGCaUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 167478 0.69 0.788873
Target:  5'- -gCCCAGCACGUAGUAuuGGcacccuGCCAc -3'
miRNA:   3'- gaGGGUCGUGCAUCGU--CCaau---CGGUc -5'
29002 5' -55.3 NC_006146.1 + 108321 0.69 0.815801
Target:  5'- aUCuCCAGCGag-AGCAGGUUGGCa-- -3'
miRNA:   3'- gAG-GGUCGUgcaUCGUCCAAUCGguc -5'
29002 5' -55.3 NC_006146.1 + 115542 0.7 0.77019
Target:  5'- gUCCCGcGCGCgGUGGCGGG--GGCUGGa -3'
miRNA:   3'- gAGGGU-CGUG-CAUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 99159 0.7 0.751007
Target:  5'- --aCCGGCAgGUGGCGGag-GGCCAGc -3'
miRNA:   3'- gagGGUCGUgCAUCGUCcaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 105242 0.7 0.77019
Target:  5'- uCUCCUGcGCACGUcGCAGGgucucuagGGCCAc -3'
miRNA:   3'- -GAGGGU-CGUGCAuCGUCCaa------UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 111896 0.7 0.751007
Target:  5'- -aCCaggCAGCGCGggaGGCAGauGUUGGCCAGg -3'
miRNA:   3'- gaGG---GUCGUGCa--UCGUC--CAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 70861 0.7 0.751007
Target:  5'- uUCCCGGCGC--AGguGGUUuGUCAGg -3'
miRNA:   3'- gAGGGUCGUGcaUCguCCAAuCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 161450 0.71 0.711443
Target:  5'- -aCCCAagGCGCGUggGGCGGGUaGGCUGGu -3'
miRNA:   3'- gaGGGU--CGUGCA--UCGUCCAaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 12014 0.71 0.695278
Target:  5'- aCUCCggugcccgagaccggCAGCuACGUGGCGGGUgcGGCCAc -3'
miRNA:   3'- -GAGG---------------GUCG-UGCAUCGUCCAa-UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 104558 0.71 0.681019
Target:  5'- aCUCCCuGCACGU---GGGcUGGCCAGc -3'
miRNA:   3'- -GAGGGuCGUGCAucgUCCaAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 28229 0.71 0.670783
Target:  5'- -aCCCAGC-CGgagGGCAGGUggcugcgaUAGCCGa -3'
miRNA:   3'- gaGGGUCGuGCa--UCGUCCA--------AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 130121 0.72 0.661544
Target:  5'- gUCCCAGCAgGaugauggaguucuugGGCAGGUccacguccgUGGCCAGc -3'
miRNA:   3'- gAGGGUCGUgCa--------------UCGUCCA---------AUCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.