Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29002 | 5' | -55.3 | NC_006146.1 | + | 115360 | 0.67 | 0.900014 |
Target: 5'- uUCCUGGCcgGCGUGGCGGcggAGCUGGa -3' miRNA: 3'- gAGGGUCG--UGCAUCGUCcaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 123617 | 0.67 | 0.889389 |
Target: 5'- gUCCCGGCugcaggACGUucuGCAGGaccucgucacccgGGCCAGg -3' miRNA: 3'- gAGGGUCG------UGCAu--CGUCCaa-----------UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 99554 | 0.67 | 0.893443 |
Target: 5'- uUCCCacuGGCACcccAGCAGGUggaaaGGCCAa -3' miRNA: 3'- gAGGG---UCGUGca-UCGUCCAa----UCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 113810 | 0.67 | 0.893443 |
Target: 5'- gUCgCGGgGCuGUcguacAGCAGGUUGGCCAu -3' miRNA: 3'- gAGgGUCgUG-CA-----UCGUCCAAUCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 167912 | 0.67 | 0.900014 |
Target: 5'- -cCCCAGCAUGac-CAGGUacUGGCCGu -3' miRNA: 3'- gaGGGUCGUGCaucGUCCA--AUCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 75756 | 0.66 | 0.918303 |
Target: 5'- gUCUCAGguCGccgGGCuucGGUUGGCCAc -3' miRNA: 3'- gAGGGUCguGCa--UCGu--CCAAUCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 34159 | 0.66 | 0.918303 |
Target: 5'- -cCCCGGCGaggGUGGgGGGUgcgcccccAGCCGGa -3' miRNA: 3'- gaGGGUCGUg--CAUCgUCCAa-------UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 100216 | 0.66 | 0.920578 |
Target: 5'- uUCCCAGCGCagaaaguucagcuccGUGGCAGuGggGGCg-- -3' miRNA: 3'- gAGGGUCGUG---------------CAUCGUC-CaaUCGguc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 102552 | 0.66 | 0.923918 |
Target: 5'- uCUCCaCAGagGCGUccagcAGCAGGUccgAGCCGa -3' miRNA: 3'- -GAGG-GUCg-UGCA-----UCGUCCAa--UCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 114241 | 0.66 | 0.923918 |
Target: 5'- -gCCCGGCACcu--CAGGgagGGCCAGc -3' miRNA: 3'- gaGGGUCGUGcaucGUCCaa-UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 68093 | 0.66 | 0.92929 |
Target: 5'- -cCCCcGCGCGauccAGguGGgcGGCCAGc -3' miRNA: 3'- gaGGGuCGUGCa---UCguCCaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 132895 | 0.66 | 0.918303 |
Target: 5'- --gUgAGCaACGUGGCAGGU--GCCGGg -3' miRNA: 3'- gagGgUCG-UGCAUCGUCCAauCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 167646 | 0.66 | 0.912447 |
Target: 5'- -gCCCGGCGCGUGcCGGG--GGcCCGGg -3' miRNA: 3'- gaGGGUCGUGCAUcGUCCaaUC-GGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 128815 | 0.66 | 0.912447 |
Target: 5'- gUCCgcgaaggaCGGCGCGguccaggAGCAGGUaagcccGGCCAGg -3' miRNA: 3'- gAGG--------GUCGUGCa------UCGUCCAa-----UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 70227 | 0.66 | 0.93442 |
Target: 5'- --aCCAGCGCGUugaaguAGCAGGgguaccCCAGg -3' miRNA: 3'- gagGGUCGUGCA------UCGUCCaauc--GGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 109589 | 0.66 | 0.93442 |
Target: 5'- gUCgUAGCACuUGGaCAGGacGGCCAGg -3' miRNA: 3'- gAGgGUCGUGcAUC-GUCCaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 27336 | 0.66 | 0.93442 |
Target: 5'- cCUCCaaaaaCAGCGgGUGGCGcGGcaaGGCCGGg -3' miRNA: 3'- -GAGG-----GUCGUgCAUCGU-CCaa-UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 108543 | 0.66 | 0.912447 |
Target: 5'- cCUCuCCGGCGCGgcGUuGGagUGGCUGGg -3' miRNA: 3'- -GAG-GGUCGUGCauCGuCCa-AUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 51404 | 0.66 | 0.912447 |
Target: 5'- aUCCCGGCaaaauuGCGaccGCAGG-UGGCUAGu -3' miRNA: 3'- gAGGGUCG------UGCau-CGUCCaAUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 170187 | 0.66 | 0.939307 |
Target: 5'- gCUCCCgAGgGCGgggccggggccUGGCGGG--GGCCAGc -3' miRNA: 3'- -GAGGG-UCgUGC-----------AUCGUCCaaUCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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