Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 29002 | 5' | -55.3 | NC_006146.1 | + | 27336 | 0.66 | 0.93442 |
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Target: 5'- cCUCCaaaaaCAGCGgGUGGCGcGGcaaGGCCGGg -3' miRNA: 3'- -GAGG-----GUCGUgCAUCGU-CCaa-UCGGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 109589 | 0.66 | 0.93442 |
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Target: 5'- gUCgUAGCACuUGGaCAGGacGGCCAGg -3' miRNA: 3'- gAGgGUCGUGcAUC-GUCCaaUCGGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 70227 | 0.66 | 0.93442 |
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Target: 5'- --aCCAGCGCGUugaaguAGCAGGgguaccCCAGg -3' miRNA: 3'- gagGGUCGUGCA------UCGUCCaauc--GGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 128815 | 0.66 | 0.912447 |
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Target: 5'- gUCCgcgaaggaCGGCGCGguccaggAGCAGGUaagcccGGCCAGg -3' miRNA: 3'- gAGG--------GUCGUGCa------UCGUCCAa-----UCGGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 167646 | 0.66 | 0.912447 |
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Target: 5'- -gCCCGGCGCGUGcCGGG--GGcCCGGg -3' miRNA: 3'- gaGGGUCGUGCAUcGUCCaaUC-GGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 132895 | 0.66 | 0.918303 |
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Target: 5'- --gUgAGCaACGUGGCAGGU--GCCGGg -3' miRNA: 3'- gagGgUCG-UGCAUCGUCCAauCGGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 75756 | 0.66 | 0.918303 |
|
Target: 5'- gUCUCAGguCGccgGGCuucGGUUGGCCAc -3' miRNA: 3'- gAGGGUCguGCa--UCGu--CCAAUCGGUc -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 170187 | 0.66 | 0.939307 |
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Target: 5'- gCUCCCgAGgGCGgggccggggccUGGCGGG--GGCCAGc -3' miRNA: 3'- -GAGGG-UCgUGC-----------AUCGUCCaaUCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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