Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29002 | 5' | -55.3 | NC_006146.1 | + | 129494 | 0.72 | 0.654344 |
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Target: 5'- -aCCCAGCGCGgccgucuacgucuGCGGGUUcguggagcGGCCGGa -3' miRNA: 3'- gaGGGUCGUGCau-----------CGUCCAA--------UCGGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 40390 | 0.72 | 0.629609 |
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Target: 5'- -gCCCGGCGCGUAGUagccucccgcgGGGgcaaagUAGCCAc -3' miRNA: 3'- gaGGGUCGUGCAUCG-----------UCCa-----AUCGGUc -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 28037 | 0.73 | 0.598718 |
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Target: 5'- -aCCCAGC-CGgagGGCAGGUggcugcaaUAGCCAa -3' miRNA: 3'- gaGGGUCGuGCa--UCGUCCA--------AUCGGUc -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 115785 | 0.74 | 0.537793 |
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Target: 5'- -gCCgAGUACG-AGCAGG-UGGCCAGg -3' miRNA: 3'- gaGGgUCGUGCaUCGUCCaAUCGGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 170512 | 0.75 | 0.48871 |
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Target: 5'- -cCCCAGCGCGcGGCGGGcggGGCCuGa -3' miRNA: 3'- gaGGGUCGUGCaUCGUCCaa-UCGGuC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 88831 | 0.76 | 0.423801 |
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Target: 5'- aCUCCCAGCACcugaAGCAGGcccuuggUGGCCAa -3' miRNA: 3'- -GAGGGUCGUGca--UCGUCCa------AUCGGUc -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 110984 | 0.82 | 0.20134 |
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Target: 5'- -aCCCAGCuCGUagccgcgcaccAGCAGGUUGGCCAGc -3' miRNA: 3'- gaGGGUCGuGCA-----------UCGUCCAAUCGGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 32127 | 1.09 | 0.003168 |
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Target: 5'- uCUCCCAGCACGUAGCAGGUUAGCCAGg -3' miRNA: 3'- -GAGGGUCGUGCAUCGUCCAAUCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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