miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 5' -55.3 NC_006146.1 + 115785 0.74 0.537793
Target:  5'- -gCCgAGUACG-AGCAGG-UGGCCAGg -3'
miRNA:   3'- gaGGgUCGUGCaUCGUCCaAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 119809 0.67 0.88664
Target:  5'- aUCCggCAGCGCaaGGCGGGggaccGGCCAGa -3'
miRNA:   3'- gAGG--GUCGUGcaUCGUCCaa---UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 123617 0.67 0.889389
Target:  5'- gUCCCGGCugcaggACGUucuGCAGGaccucgucacccgGGCCAGg -3'
miRNA:   3'- gAGGGUCG------UGCAu--CGUCCaa-----------UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 123679 0.68 0.832921
Target:  5'- --gCCAGCucaagauCGUGGCGGaGgcGGCCAGg -3'
miRNA:   3'- gagGGUCGu------GCAUCGUC-CaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 128815 0.66 0.912447
Target:  5'- gUCCgcgaaggaCGGCGCGguccaggAGCAGGUaagcccGGCCAGg -3'
miRNA:   3'- gAGG--------GUCGUGCa------UCGUCCAa-----UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 129494 0.72 0.654344
Target:  5'- -aCCCAGCGCGgccgucuacgucuGCGGGUUcguggagcGGCCGGa -3'
miRNA:   3'- gaGGGUCGUGCau-----------CGUCCAA--------UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 130121 0.72 0.661544
Target:  5'- gUCCCAGCAgGaugauggaguucuugGGCAGGUccacguccgUGGCCAGc -3'
miRNA:   3'- gAGGGUCGUgCa--------------UCGUCCA---------AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 132895 0.66 0.918303
Target:  5'- --gUgAGCaACGUGGCAGGU--GCCGGg -3'
miRNA:   3'- gagGgUCG-UGCAUCGUCCAauCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 135110 0.66 0.939307
Target:  5'- uUCCCAGgguUugGguuugcuccGGCGGGgggUGGCCGGg -3'
miRNA:   3'- gAGGGUC---GugCa--------UCGUCCa--AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 148303 0.66 0.92929
Target:  5'- -cUCCAGCAgG-AGCGcGGagAGCCAGa -3'
miRNA:   3'- gaGGGUCGUgCaUCGU-CCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 155138 0.66 0.92929
Target:  5'- gUCCCcGCgGCGUcgcAGCAGcg-GGCCAGg -3'
miRNA:   3'- gAGGGuCG-UGCA---UCGUCcaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 155855 0.67 0.900014
Target:  5'- cCUCCUcGCAgGcccGGCGGGcccUGGCCAGg -3'
miRNA:   3'- -GAGGGuCGUgCa--UCGUCCa--AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 157604 0.69 0.806983
Target:  5'- -gCCCAGCACGUGG-GGG-UAGUCGc -3'
miRNA:   3'- gaGGGUCGUGCAUCgUCCaAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 161450 0.71 0.711443
Target:  5'- -aCCCAagGCGCGUggGGCGGGUaGGCUGGu -3'
miRNA:   3'- gaGGGU--CGUGCA--UCGUCCAaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 167307 0.67 0.900014
Target:  5'- --gCCGGCGCcu-GCAGGgggGGCCGGc -3'
miRNA:   3'- gagGGUCGUGcauCGUCCaa-UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 167392 0.66 0.939307
Target:  5'- gCUCCCgAGgGCGgggccggggccUGGCGGG--GGCCAGc -3'
miRNA:   3'- -GAGGG-UCgUGC-----------AUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 167478 0.69 0.788873
Target:  5'- -gCCCAGCACGUAGUAuuGGcacccuGCCAc -3'
miRNA:   3'- gaGGGUCGUGCAUCGU--CCaau---CGGUc -5'
29002 5' -55.3 NC_006146.1 + 167646 0.66 0.912447
Target:  5'- -gCCCGGCGCGUGcCGGG--GGcCCGGg -3'
miRNA:   3'- gaGGGUCGUGCAUcGUCCaaUC-GGUC- -5'
29002 5' -55.3 NC_006146.1 + 167912 0.67 0.900014
Target:  5'- -cCCCAGCAUGac-CAGGUacUGGCCGu -3'
miRNA:   3'- gaGGGUCGUGCaucGUCCA--AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 168239 0.67 0.900014
Target:  5'- --gCCGGCGCcu-GCAGGgggGGCCGGc -3'
miRNA:   3'- gagGGUCGUGcauCGUCCaa-UCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.