miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 5' -55.3 NC_006146.1 + 105242 0.7 0.77019
Target:  5'- uCUCCUGcGCACGUcGCAGGgucucuagGGCCAc -3'
miRNA:   3'- -GAGGGU-CGUGCAuCGUCCaa------UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 104558 0.71 0.681019
Target:  5'- aCUCCCuGCACGU---GGGcUGGCCAGc -3'
miRNA:   3'- -GAGGGuCGUGCAucgUCCaAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 102552 0.66 0.923918
Target:  5'- uCUCCaCAGagGCGUccagcAGCAGGUccgAGCCGa -3'
miRNA:   3'- -GAGG-GUCg-UGCA-----UCGUCCAa--UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 100216 0.66 0.920578
Target:  5'- uUCCCAGCGCagaaaguucagcuccGUGGCAGuGggGGCg-- -3'
miRNA:   3'- gAGGGUCGUG---------------CAUCGUC-CaaUCGguc -5'
29002 5' -55.3 NC_006146.1 + 99554 0.67 0.893443
Target:  5'- uUCCCacuGGCACcccAGCAGGUggaaaGGCCAa -3'
miRNA:   3'- gAGGG---UCGUGca-UCGUCCAa----UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 99159 0.7 0.751007
Target:  5'- --aCCGGCAgGUGGCGGag-GGCCAGc -3'
miRNA:   3'- gagGGUCGUgCAUCGUCcaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 90541 0.67 0.90635
Target:  5'- cCUCCCGGaGCGguggAGCAGGgc--CCGGg -3'
miRNA:   3'- -GAGGGUCgUGCa---UCGUCCaaucGGUC- -5'
29002 5' -55.3 NC_006146.1 + 88831 0.76 0.423801
Target:  5'- aCUCCCAGCACcugaAGCAGGcccuuggUGGCCAa -3'
miRNA:   3'- -GAGGGUCGUGca--UCGUCCa------AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 75756 0.66 0.918303
Target:  5'- gUCUCAGguCGccgGGCuucGGUUGGCCAc -3'
miRNA:   3'- gAGGGUCguGCa--UCGu--CCAAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 71163 0.69 0.788873
Target:  5'- --aCCGGCACuGUGGCuuGGGUgguggUAGCCGGu -3'
miRNA:   3'- gagGGUCGUG-CAUCG--UCCA-----AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 70861 0.7 0.751007
Target:  5'- uUCCCGGCGC--AGguGGUUuGUCAGg -3'
miRNA:   3'- gAGGGUCGUGcaUCguCCAAuCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 70227 0.66 0.93442
Target:  5'- --aCCAGCGCGUugaaguAGCAGGgguaccCCAGg -3'
miRNA:   3'- gagGGUCGUGCA------UCGUCCaauc--GGUC- -5'
29002 5' -55.3 NC_006146.1 + 68093 0.66 0.92929
Target:  5'- -cCCCcGCGCGauccAGguGGgcGGCCAGc -3'
miRNA:   3'- gaGGGuCGUGCa---UCguCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 51404 0.66 0.912447
Target:  5'- aUCCCGGCaaaauuGCGaccGCAGG-UGGCUAGu -3'
miRNA:   3'- gAGGGUCG------UGCau-CGUCCaAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 49829 0.68 0.832921
Target:  5'- -aUCUGGCACGUGugccGCAGGcgGGUCAGg -3'
miRNA:   3'- gaGGGUCGUGCAU----CGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 43585 0.68 0.832921
Target:  5'- uUCCCGGggaGCGgGGCGGGa-GGCCGGg -3'
miRNA:   3'- gAGGGUCg--UGCaUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 43356 0.66 0.93442
Target:  5'- -gCgCAGCcCGUGGCAGGgggUGGCUu- -3'
miRNA:   3'- gaGgGUCGuGCAUCGUCCa--AUCGGuc -5'
29002 5' -55.3 NC_006146.1 + 41077 0.67 0.872353
Target:  5'- --aCgGGgGCGUGGCGGGUgGGCCGc -3'
miRNA:   3'- gagGgUCgUGCAUCGUCCAaUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 40390 0.72 0.629609
Target:  5'- -gCCCGGCGCGUAGUagccucccgcgGGGgcaaagUAGCCAc -3'
miRNA:   3'- gaGGGUCGUGCAUCG-----------UCCa-----AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 34159 0.66 0.918303
Target:  5'- -cCCCGGCGaggGUGGgGGGUgcgcccccAGCCGGa -3'
miRNA:   3'- gaGGGUCGUg--CAUCgUCCAa-------UCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.