Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29002 | 5' | -55.3 | NC_006146.1 | + | 32127 | 1.09 | 0.003168 |
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Target: 5'- uCUCCCAGCACGUAGCAGGUUAGCCAGg -3' miRNA: 3'- -GAGGGUCGUGCAUCGUCCAAUCGGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 28229 | 0.71 | 0.670783 |
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Target: 5'- -aCCCAGC-CGgagGGCAGGUggcugcgaUAGCCGa -3' miRNA: 3'- gaGGGUCGuGCa--UCGUCCA--------AUCGGUc -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 28037 | 0.73 | 0.598718 |
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Target: 5'- -aCCCAGC-CGgagGGCAGGUggcugcaaUAGCCAa -3' miRNA: 3'- gaGGGUCGuGCa--UCGUCCA--------AUCGGUc -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 27336 | 0.66 | 0.93442 |
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Target: 5'- cCUCCaaaaaCAGCGgGUGGCGcGGcaaGGCCGGg -3' miRNA: 3'- -GAGG-----GUCGUgCAUCGU-CCaa-UCGGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 23964 | 0.69 | 0.82445 |
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Target: 5'- -cCCCGGguCG-GGUGGGggAGCCGGa -3' miRNA: 3'- gaGGGUCguGCaUCGUCCaaUCGGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 21972 | 0.68 | 0.857193 |
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Target: 5'- aUUCCAGCcgagaaGUGGCGGGgaAGCUGGu -3' miRNA: 3'- gAGGGUCGug----CAUCGUCCaaUCGGUC- -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 12014 | 0.71 | 0.695278 |
|
Target: 5'- aCUCCggugcccgagaccggCAGCuACGUGGCGGGUgcGGCCAc -3' miRNA: 3'- -GAGG---------------GUCG-UGCAUCGUCCAa-UCGGUc -5' |
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| 29002 | 5' | -55.3 | NC_006146.1 | + | 9069 | 0.68 | 0.841207 |
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Target: 5'- uCUCCCacGGgGCGUGGCccaaaAGGaaAGCCGGg -3' miRNA: 3'- -GAGGG--UCgUGCAUCG-----UCCaaUCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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