Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29002 | 5' | -55.3 | NC_006146.1 | + | 12014 | 0.71 | 0.695278 |
|
Target: 5'- aCUCCggugcccgagaccggCAGCuACGUGGCGGGUgcGGCCAc -3' miRNA: 3'- -GAGG---------------GUCG-UGCAUCGUCCAa-UCGGUc -5' |
|||||||
| 29002 | 5' | -55.3 | NC_006146.1 | + | 161450 | 0.71 | 0.711443 |
|
Target: 5'- -aCCCAagGCGCGUggGGCGGGUaGGCUGGu -3' miRNA: 3'- gaGGGU--CGUGCA--UCGUCCAaUCGGUC- -5' |
|||||||
| 29002 | 5' | -55.3 | NC_006146.1 | + | 111896 | 0.7 | 0.751007 |
|
Target: 5'- -aCCaggCAGCGCGggaGGCAGauGUUGGCCAGg -3' miRNA: 3'- gaGG---GUCGUGCa--UCGUC--CAAUCGGUC- -5' |
|||||||
| 29002 | 5' | -55.3 | NC_006146.1 | + | 70861 | 0.7 | 0.751007 |
|
Target: 5'- uUCCCGGCGC--AGguGGUUuGUCAGg -3' miRNA: 3'- gAGGGUCGUGcaUCguCCAAuCGGUC- -5' |
|||||||
| 29002 | 5' | -55.3 | NC_006146.1 | + | 115542 | 0.7 | 0.77019 |
|
Target: 5'- gUCCCGcGCGCgGUGGCGGG--GGCUGGa -3' miRNA: 3'- gAGGGU-CGUG-CAUCGUCCaaUCGGUC- -5' |
|||||||
| 29002 | 5' | -55.3 | NC_006146.1 | + | 167478 | 0.69 | 0.788873 |
|
Target: 5'- -gCCCAGCACGUAGUAuuGGcacccuGCCAc -3' miRNA: 3'- gaGGGUCGUGCAUCGU--CCaau---CGGUc -5' |
|||||||
| 29002 | 5' | -55.3 | NC_006146.1 | + | 108321 | 0.69 | 0.815801 |
|
Target: 5'- aUCuCCAGCGag-AGCAGGUUGGCa-- -3' miRNA: 3'- gAG-GGUCGUgcaUCGUCCAAUCGguc -5' |
|||||||
| 29002 | 5' | -55.3 | NC_006146.1 | + | 112488 | 0.66 | 0.93442 |
|
Target: 5'- -cCCCGGCGCGcucauagagaUAGCGGuccaggGGCCGGu -3' miRNA: 3'- gaGGGUCGUGC----------AUCGUCcaa---UCGGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home