miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 5' -55.3 NC_006146.1 + 27336 0.66 0.93442
Target:  5'- cCUCCaaaaaCAGCGgGUGGCGcGGcaaGGCCGGg -3'
miRNA:   3'- -GAGG-----GUCGUgCAUCGU-CCaa-UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 108543 0.66 0.912447
Target:  5'- cCUCuCCGGCGCGgcGUuGGagUGGCUGGg -3'
miRNA:   3'- -GAG-GGUCGUGCauCGuCCa-AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 51404 0.66 0.912447
Target:  5'- aUCCCGGCaaaauuGCGaccGCAGG-UGGCUAGu -3'
miRNA:   3'- gAGGGUCG------UGCau-CGUCCaAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 167912 0.67 0.900014
Target:  5'- -cCCCAGCAUGac-CAGGUacUGGCCGu -3'
miRNA:   3'- gaGGGUCGUGCaucGUCCA--AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 115360 0.67 0.900014
Target:  5'- uUCCUGGCcgGCGUGGCGGcggAGCUGGa -3'
miRNA:   3'- gAGGGUCG--UGCAUCGUCcaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 9069 0.68 0.841207
Target:  5'- uCUCCCacGGgGCGUGGCccaaaAGGaaAGCCGGg -3'
miRNA:   3'- -GAGGG--UCgUGCAUCG-----UCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 21972 0.68 0.857193
Target:  5'- aUUCCAGCcgagaaGUGGCGGGgaAGCUGGu -3'
miRNA:   3'- gAGGGUCGug----CAUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 110094 0.68 0.864879
Target:  5'- gUCCCuGCuuAUGUAGUu-GUUGGCCAGg -3'
miRNA:   3'- gAGGGuCG--UGCAUCGucCAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 123617 0.67 0.889389
Target:  5'- gUCCCGGCugcaggACGUucuGCAGGaccucgucacccgGGCCAGg -3'
miRNA:   3'- gAGGGUCG------UGCAu--CGUCCaa-----------UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 99554 0.67 0.893443
Target:  5'- uUCCCacuGGCACcccAGCAGGUggaaaGGCCAa -3'
miRNA:   3'- gAGGG---UCGUGca-UCGUCCAa----UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 113810 0.67 0.893443
Target:  5'- gUCgCGGgGCuGUcguacAGCAGGUUGGCCAu -3'
miRNA:   3'- gAGgGUCgUG-CA-----UCGUCCAAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 157604 0.69 0.806983
Target:  5'- -gCCCAGCACGUGG-GGG-UAGUCGc -3'
miRNA:   3'- gaGGGUCGUGCAUCgUCCaAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 71163 0.69 0.788873
Target:  5'- --aCCGGCACuGUGGCuuGGGUgguggUAGCCGGu -3'
miRNA:   3'- gagGGUCGUG-CAUCG--UCCA-----AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 106405 0.69 0.788873
Target:  5'- -gCCUcGCAgCGUGGCcGGUUGGCCGa -3'
miRNA:   3'- gaGGGuCGU-GCAUCGuCCAAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 105242 0.7 0.77019
Target:  5'- uCUCCUGcGCACGUcGCAGGgucucuagGGCCAc -3'
miRNA:   3'- -GAGGGU-CGUGCAuCGUCCaa------UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 99159 0.7 0.751007
Target:  5'- --aCCGGCAgGUGGCGGag-GGCCAGc -3'
miRNA:   3'- gagGGUCGUgCAUCGUCcaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 129494 0.72 0.654344
Target:  5'- -aCCCAGCGCGgccgucuacgucuGCGGGUUcguggagcGGCCGGa -3'
miRNA:   3'- gaGGGUCGUGCau-----------CGUCCAA--------UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 170512 0.75 0.48871
Target:  5'- -cCCCAGCGCGcGGCGGGcggGGCCuGa -3'
miRNA:   3'- gaGGGUCGUGCaUCGUCCaa-UCGGuC- -5'
29002 5' -55.3 NC_006146.1 + 88831 0.76 0.423801
Target:  5'- aCUCCCAGCACcugaAGCAGGcccuuggUGGCCAa -3'
miRNA:   3'- -GAGGGUCGUGca--UCGUCCa------AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 170187 0.66 0.939307
Target:  5'- gCUCCCgAGgGCGgggccggggccUGGCGGG--GGCCAGc -3'
miRNA:   3'- -GAGGG-UCgUGC-----------AUCGUCCaaUCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.