Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29002 | 5' | -55.3 | NC_006146.1 | + | 167646 | 0.66 | 0.912447 |
Target: 5'- -gCCCGGCGCGUGcCGGG--GGcCCGGg -3' miRNA: 3'- gaGGGUCGUGCAUcGUCCaaUC-GGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 51404 | 0.66 | 0.912447 |
Target: 5'- aUCCCGGCaaaauuGCGaccGCAGG-UGGCUAGu -3' miRNA: 3'- gAGGGUCG------UGCau-CGUCCaAUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 108543 | 0.66 | 0.912447 |
Target: 5'- cCUCuCCGGCGCGgcGUuGGagUGGCUGGg -3' miRNA: 3'- -GAG-GGUCGUGCauCGuCCa-AUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 90541 | 0.67 | 0.90635 |
Target: 5'- cCUCCCGGaGCGguggAGCAGGgc--CCGGg -3' miRNA: 3'- -GAGGGUCgUGCa---UCGUCCaaucGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 168239 | 0.67 | 0.900014 |
Target: 5'- --gCCGGCGCcu-GCAGGgggGGCCGGc -3' miRNA: 3'- gagGGUCGUGcauCGUCCaa-UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 155855 | 0.67 | 0.900014 |
Target: 5'- cCUCCUcGCAgGcccGGCGGGcccUGGCCAGg -3' miRNA: 3'- -GAGGGuCGUgCa--UCGUCCa--AUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 167307 | 0.67 | 0.900014 |
Target: 5'- --gCCGGCGCcu-GCAGGgggGGCCGGc -3' miRNA: 3'- gagGGUCGUGcauCGUCCaa-UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 169171 | 0.67 | 0.900014 |
Target: 5'- --gCCGGCGCcu-GCAGGgggGGCCGGc -3' miRNA: 3'- gagGGUCGUGcauCGUCCaa-UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 115360 | 0.67 | 0.900014 |
Target: 5'- uUCCUGGCcgGCGUGGCGGcggAGCUGGa -3' miRNA: 3'- gAGGGUCG--UGCAUCGUCcaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 167912 | 0.67 | 0.900014 |
Target: 5'- -cCCCAGCAUGac-CAGGUacUGGCCGu -3' miRNA: 3'- gaGGGUCGUGCaucGUCCA--AUCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 113810 | 0.67 | 0.893443 |
Target: 5'- gUCgCGGgGCuGUcguacAGCAGGUUGGCCAu -3' miRNA: 3'- gAGgGUCgUG-CA-----UCGUCCAAUCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 99554 | 0.67 | 0.893443 |
Target: 5'- uUCCCacuGGCACcccAGCAGGUggaaaGGCCAa -3' miRNA: 3'- gAGGG---UCGUGca-UCGUCCAa----UCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 123617 | 0.67 | 0.889389 |
Target: 5'- gUCCCGGCugcaggACGUucuGCAGGaccucgucacccgGGCCAGg -3' miRNA: 3'- gAGGGUCG------UGCAu--CGUCCaa-----------UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 119809 | 0.67 | 0.88664 |
Target: 5'- aUCCggCAGCGCaaGGCGGGggaccGGCCAGa -3' miRNA: 3'- gAGG--GUCGUGcaUCGUCCaa---UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 41077 | 0.67 | 0.872353 |
Target: 5'- --aCgGGgGCGUGGCGGGUgGGCCGc -3' miRNA: 3'- gagGgUCgUGCAUCGUCCAaUCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 110094 | 0.68 | 0.864879 |
Target: 5'- gUCCCuGCuuAUGUAGUu-GUUGGCCAGg -3' miRNA: 3'- gAGGGuCG--UGCAUCGucCAAUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 21972 | 0.68 | 0.857193 |
Target: 5'- aUUCCAGCcgagaaGUGGCGGGgaAGCUGGu -3' miRNA: 3'- gAGGGUCGug----CAUCGUCCaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 9069 | 0.68 | 0.841207 |
Target: 5'- uCUCCCacGGgGCGUGGCccaaaAGGaaAGCCGGg -3' miRNA: 3'- -GAGGG--UCgUGCAUCG-----UCCaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 43585 | 0.68 | 0.832921 |
Target: 5'- uUCCCGGggaGCGgGGCGGGa-GGCCGGg -3' miRNA: 3'- gAGGGUCg--UGCaUCGUCCaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 123679 | 0.68 | 0.832921 |
Target: 5'- --gCCAGCucaagauCGUGGCGGaGgcGGCCAGg -3' miRNA: 3'- gagGGUCGu------GCAUCGUC-CaaUCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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