miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 3' -56.6 NC_006146.1 + 161715 0.67 0.831851
Target:  5'- uCCUGGgagAAGGCu-UGGGGGUggguggcacggUGGGAGc -3'
miRNA:   3'- uGGACU---UUCCGuuACCCCCA-----------GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 44384 0.67 0.840131
Target:  5'- cGCCcGggGGGC-GUGuGGGGcCGGGc- -3'
miRNA:   3'- -UGGaCuuUCCGuUAC-CCCCaGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 48566 0.67 0.848221
Target:  5'- gACCuUGGAaucauccgGGGCcucGGGGGUCaGGGAGg -3'
miRNA:   3'- -UGG-ACUU--------UCCGuuaCCCCCAG-CCCUU- -5'
29003 3' -56.6 NC_006146.1 + 11139 0.67 0.848221
Target:  5'- uACCUG-GGGGCGGUGGuGGUCacGGAGg -3'
miRNA:   3'- -UGGACuUUCCGUUACCcCCAGc-CCUU- -5'
29003 3' -56.6 NC_006146.1 + 24208 0.67 0.848221
Target:  5'- gGCCUGcGAGGUucuGUuGGGGcCGGGGc -3'
miRNA:   3'- -UGGACuUUCCGu--UAcCCCCaGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 39899 0.68 0.805943
Target:  5'- gGCCUGcgGGGCGGgaaacgacgaGGaGGGUgGGGGAa -3'
miRNA:   3'- -UGGACuuUCCGUUa---------CC-CCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 52344 0.68 0.796978
Target:  5'- uGCCcGggGcggcguccuuuuGGCAGUGGGGGUCGaagagguagaaGGAGc -3'
miRNA:   3'- -UGGaCuuU------------CCGUUACCCCCAGC-----------CCUU- -5'
29003 3' -56.6 NC_006146.1 + 156917 0.68 0.759708
Target:  5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3'
miRNA:   3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 153839 0.68 0.759708
Target:  5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3'
miRNA:   3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 144606 0.68 0.759708
Target:  5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3'
miRNA:   3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 150761 0.68 0.759708
Target:  5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3'
miRNA:   3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 141528 0.68 0.759708
Target:  5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3'
miRNA:   3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 141622 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 147777 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 150855 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 153933 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 157011 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 40468 0.69 0.740352
Target:  5'- gGCCUGguGGGUGAaGGGGGgcagaGGGGc -3'
miRNA:   3'- -UGGACuuUCCGUUaCCCCCag---CCCUu -5'
29003 3' -56.6 NC_006146.1 + 141813 0.69 0.750082
Target:  5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3'
miRNA:   3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5'
29003 3' -56.6 NC_006146.1 + 144891 0.69 0.750082
Target:  5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3'
miRNA:   3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.