Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29003 | 3' | -56.6 | NC_006146.1 | + | 144891 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 147969 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 151047 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 154125 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 153933 | 0.69 | 0.740352 |
Target: 5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3' miRNA: 3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 150855 | 0.69 | 0.740352 |
Target: 5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3' miRNA: 3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 147777 | 0.69 | 0.740352 |
Target: 5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3' miRNA: 3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 141622 | 0.69 | 0.740352 |
Target: 5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3' miRNA: 3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 61827 | 0.69 | 0.740352 |
Target: 5'- gGCgCUGGugGGGGCAGUGGGGcugguGcCGGGAc -3' miRNA: 3'- -UG-GACU--UUCCGUUACCCC-----CaGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 18918 | 0.69 | 0.720617 |
Target: 5'- cCCUGAc-GGUggUGGGGGguaacgaggaCGGGAAg -3' miRNA: 3'- uGGACUuuCCGuuACCCCCa---------GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144700 | 0.69 | 0.700576 |
Target: 5'- uGCCUG-GAGGCGAgacUGGGcGGcugCGGGGGa -3' miRNA: 3'- -UGGACuUUCCGUU---ACCC-CCa--GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 48995 | 0.69 | 0.700576 |
Target: 5'- gACCUGGGAGGC--UGGGGcGUugcccagcuUGGGGAc -3' miRNA: 3'- -UGGACUUUCCGuuACCCC-CA---------GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 157203 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 157011 | 0.69 | 0.740352 |
Target: 5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3' miRNA: 3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 57319 | 0.7 | 0.670101 |
Target: 5'- gACCUGGAcgcguGGCucucUGGGGG-CGGGGc -3' miRNA: 3'- -UGGACUUu----CCGuu--ACCCCCaGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 170207 | 0.7 | 0.653718 |
Target: 5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3' miRNA: 3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 169276 | 0.7 | 0.653718 |
Target: 5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3' miRNA: 3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 168344 | 0.7 | 0.653718 |
Target: 5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3' miRNA: 3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 167412 | 0.7 | 0.653718 |
Target: 5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3' miRNA: 3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 141426 | 0.7 | 0.670101 |
Target: 5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3' miRNA: 3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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