miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 3' -56.6 NC_006146.1 + 141426 0.7 0.670101
Target:  5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3'
miRNA:   3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 137640 0.7 0.649614
Target:  5'- cACCUGGAAGGCAAgcGGGuUCGuGGAGc -3'
miRNA:   3'- -UGGACUUUCCGUUacCCCcAGC-CCUU- -5'
29003 3' -56.6 NC_006146.1 + 167412 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 156815 0.7 0.670101
Target:  5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3'
miRNA:   3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 153737 0.7 0.670101
Target:  5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3'
miRNA:   3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 147582 0.7 0.670101
Target:  5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3'
miRNA:   3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 144504 0.7 0.670101
Target:  5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3'
miRNA:   3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 150660 0.7 0.670101
Target:  5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3'
miRNA:   3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 168344 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 169276 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 170207 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 57319 0.7 0.670101
Target:  5'- gACCUGGAcgcguGGCucucUGGGGG-CGGGGc -3'
miRNA:   3'- -UGGACUUu----CCGuu--ACCCCCaGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 147777 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 141813 0.69 0.750082
Target:  5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3'
miRNA:   3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5'
29003 3' -56.6 NC_006146.1 + 40468 0.69 0.740352
Target:  5'- gGCCUGguGGGUGAaGGGGGgcagaGGGGc -3'
miRNA:   3'- -UGGACuuUCCGUUaCCCCCag---CCCUu -5'
29003 3' -56.6 NC_006146.1 + 157011 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 153933 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 150855 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 141622 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 61827 0.69 0.740352
Target:  5'- gGCgCUGGugGGGGCAGUGGGGcugguGcCGGGAc -3'
miRNA:   3'- -UG-GACU--UUCCGUUACCCC-----CaGCCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.