Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29003 | 3' | -56.6 | NC_006146.1 | + | 44384 | 0.67 | 0.840131 |
Target: 5'- cGCCcGggGGGC-GUGuGGGGcCGGGc- -3' miRNA: 3'- -UGGaCuuUCCGuUAC-CCCCaGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 131618 | 0.67 | 0.831851 |
Target: 5'- -gCUGu--GGUAGUGGGGGUgaugguaguggcCGGGAu -3' miRNA: 3'- ugGACuuuCCGUUACCCCCA------------GCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 166686 | 0.67 | 0.831851 |
Target: 5'- gGCCUGGcaggggggagacGGGGCAAUGGGaGGg-GGGu- -3' miRNA: 3'- -UGGACU------------UUCCGUUACCC-CCagCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 161715 | 0.67 | 0.831851 |
Target: 5'- uCCUGGgagAAGGCu-UGGGGGUggguggcacggUGGGAGc -3' miRNA: 3'- uGGACU---UUCCGuuACCCCCA-----------GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 117239 | 0.67 | 0.823387 |
Target: 5'- uCCUGGAaagcggccgGGGCcagGGGGGUCGGc-- -3' miRNA: 3'- uGGACUU---------UCCGuuaCCCCCAGCCcuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 39899 | 0.68 | 0.805943 |
Target: 5'- gGCCUGcgGGGCGGgaaacgacgaGGaGGGUgGGGGAa -3' miRNA: 3'- -UGGACuuUCCGUUa---------CC-CCCAgCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 52344 | 0.68 | 0.796978 |
Target: 5'- uGCCcGggGcggcguccuuuuGGCAGUGGGGGUCGaagagguagaaGGAGc -3' miRNA: 3'- -UGGaCuuU------------CCGUUACCCCCAGC-----------CCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 141528 | 0.68 | 0.759708 |
Target: 5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3' miRNA: 3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 156917 | 0.68 | 0.759708 |
Target: 5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3' miRNA: 3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 153839 | 0.68 | 0.759708 |
Target: 5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3' miRNA: 3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 150761 | 0.68 | 0.759708 |
Target: 5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3' miRNA: 3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144606 | 0.68 | 0.759708 |
Target: 5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3' miRNA: 3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 141813 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 157203 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 154125 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 147969 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 151047 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144891 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 141622 | 0.69 | 0.740352 |
Target: 5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3' miRNA: 3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 147777 | 0.69 | 0.740352 |
Target: 5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3' miRNA: 3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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