Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29003 | 3' | -56.6 | NC_006146.1 | + | 141426 | 0.7 | 0.670101 |
Target: 5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3' miRNA: 3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 168344 | 0.7 | 0.653718 |
Target: 5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3' miRNA: 3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 169276 | 0.7 | 0.653718 |
Target: 5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3' miRNA: 3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 170207 | 0.7 | 0.653718 |
Target: 5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3' miRNA: 3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 167412 | 0.7 | 0.653718 |
Target: 5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3' miRNA: 3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 137640 | 0.7 | 0.649614 |
Target: 5'- cACCUGGAAGGCAAgcGGGuUCGuGGAGc -3' miRNA: 3'- -UGGACUUUCCGUUacCCCcAGC-CCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144283 | 0.71 | 0.628043 |
Target: 5'- gACCUcAGAGGCAcucucggAUGuGGGGUgGGGGAu -3' miRNA: 3'- -UGGAcUUUCCGU-------UAC-CCCCAgCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 69524 | 0.71 | 0.618799 |
Target: 5'- gGCCUGugguGAGG-AAUGGGGGgUGGGGg -3' miRNA: 3'- -UGGACu---UUCCgUUACCCCCaGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 168616 | 0.71 | 0.608537 |
Target: 5'- gACCcGAGGGGCGAgcgGGGGGcuucccCGGGGc -3' miRNA: 3'- -UGGaCUUUCCGUUa--CCCCCa-----GCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 167683 | 0.71 | 0.608537 |
Target: 5'- gACCcGAGGGGCGAgcgGGGGGcuucccCGGGGc -3' miRNA: 3'- -UGGaCUUUCCGUUa--CCCCCa-----GCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 169548 | 0.71 | 0.608537 |
Target: 5'- gACCcGAGGGGCGAgcgGGGGGcuucccCGGGGc -3' miRNA: 3'- -UGGaCUUUCCGUUa--CCCCCa-----GCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 53044 | 0.72 | 0.577887 |
Target: 5'- cGCCgccGAGAGGUAAggggGGcGGGUgGGGAAc -3' miRNA: 3'- -UGGa--CUUUCCGUUa---CC-CCCAgCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 75243 | 0.73 | 0.517806 |
Target: 5'- aGCCUGAccGAGGCGggcGUGGGGugcaCGGGGAu -3' miRNA: 3'- -UGGACU--UUCCGU---UACCCCca--GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 55023 | 0.73 | 0.498314 |
Target: 5'- --aUGGGggcGGGCGggAUGGGGGUCGGGGc -3' miRNA: 3'- uggACUU---UCCGU--UACCCCCAGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 50714 | 0.74 | 0.439253 |
Target: 5'- gGCCUGAaaGccggcguugagcggGGGCGAcGGGGcGUCGGGAAg -3' miRNA: 3'- -UGGACU--U--------------UCCGUUaCCCC-CAGCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144351 | 0.75 | 0.386901 |
Target: 5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3' miRNA: 3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 150507 | 0.75 | 0.386901 |
Target: 5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3' miRNA: 3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 153585 | 0.75 | 0.386901 |
Target: 5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3' miRNA: 3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 147429 | 0.75 | 0.386901 |
Target: 5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3' miRNA: 3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 141273 | 0.75 | 0.386901 |
Target: 5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3' miRNA: 3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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