miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 3' -56.6 NC_006146.1 + 11139 0.67 0.848221
Target:  5'- uACCUG-GGGGCGGUGGuGGUCacGGAGg -3'
miRNA:   3'- -UGGACuUUCCGUUACCcCCAGc-CCUU- -5'
29003 3' -56.6 NC_006146.1 + 18918 0.69 0.720617
Target:  5'- cCCUGAc-GGUggUGGGGGguaacgaggaCGGGAAg -3'
miRNA:   3'- uGGACUuuCCGuuACCCCCa---------GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 24208 0.67 0.848221
Target:  5'- gGCCUGcGAGGUucuGUuGGGGcCGGGGc -3'
miRNA:   3'- -UGGACuUUCCGu--UAcCCCCaGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 32172 0.66 0.885581
Target:  5'- aACCguaaggaggGggGGGUAggGGGGGgaGGGAu -3'
miRNA:   3'- -UGGa--------CuuUCCGUuaCCCCCagCCCUu -5'
29003 3' -56.6 NC_006146.1 + 33460 1.06 0.003925
Target:  5'- cACCUGAAAGGCAAUGGGGGUCGGGAAg -3'
miRNA:   3'- -UGGACUUUCCGUUACCCCCAGCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 33630 0.9 0.048719
Target:  5'- cACCUGGAAGGCAAcGGGGGUgGGGGAg -3'
miRNA:   3'- -UGGACUUUCCGUUaCCCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 33817 0.9 0.048719
Target:  5'- cACCUGGAAGGCAAcGGGGGUgGGGGAg -3'
miRNA:   3'- -UGGACUUUCCGUUaCCCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 34003 0.94 0.025226
Target:  5'- cACCUGGAAGGCAGgggGGGGGUCGGGGc -3'
miRNA:   3'- -UGGACUUUCCGUUa--CCCCCAGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 39899 0.68 0.805943
Target:  5'- gGCCUGcgGGGCGGgaaacgacgaGGaGGGUgGGGGAa -3'
miRNA:   3'- -UGGACuuUCCGUUa---------CC-CCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 40468 0.69 0.740352
Target:  5'- gGCCUGguGGGUGAaGGGGGgcagaGGGGc -3'
miRNA:   3'- -UGGACuuUCCGUUaCCCCCag---CCCUu -5'
29003 3' -56.6 NC_006146.1 + 41147 0.67 0.848221
Target:  5'- cCCUGGAGGGaCGA-GGacuGGUCGGGGu -3'
miRNA:   3'- uGGACUUUCC-GUUaCCc--CCAGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 42531 0.69 0.730528
Target:  5'- uGCCUGAAcuuuGGGaagcaGAcgGGGGGUgGGGGGg -3'
miRNA:   3'- -UGGACUU----UCCg----UUa-CCCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 44384 0.67 0.840131
Target:  5'- cGCCcGggGGGC-GUGuGGGGcCGGGc- -3'
miRNA:   3'- -UGGaCuuUCCGuUAC-CCCCaGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 48566 0.67 0.848221
Target:  5'- gACCuUGGAaucauccgGGGCcucGGGGGUCaGGGAGg -3'
miRNA:   3'- -UGG-ACUU--------UCCGuuaCCCCCAG-CCCUU- -5'
29003 3' -56.6 NC_006146.1 + 48995 0.69 0.700576
Target:  5'- gACCUGGGAGGC--UGGGGcGUugcccagcuUGGGGAc -3'
miRNA:   3'- -UGGACUUUCCGuuACCCC-CA---------GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 49677 0.66 0.863802
Target:  5'- cACUUGAGcauucCGAUGGcGGGUCGGGGc -3'
miRNA:   3'- -UGGACUUucc--GUUACC-CCCAGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 50714 0.74 0.439253
Target:  5'- gGCCUGAaaGccggcguugagcggGGGCGAcGGGGcGUCGGGAAg -3'
miRNA:   3'- -UGGACU--U--------------UCCGUUaCCCC-CAGCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 51072 0.69 0.71063
Target:  5'- uGCCgcugGAcagAAGGCAGUGGGGauGUUGaGGAAg -3'
miRNA:   3'- -UGGa---CU---UUCCGUUACCCC--CAGC-CCUU- -5'
29003 3' -56.6 NC_006146.1 + 52344 0.68 0.796978
Target:  5'- uGCCcGggGcggcguccuuuuGGCAGUGGGGGUCGaagagguagaaGGAGc -3'
miRNA:   3'- -UGGaCuuU------------CCGUUACCCCCAGC-----------CCUU- -5'
29003 3' -56.6 NC_006146.1 + 53044 0.72 0.577887
Target:  5'- cGCCgccGAGAGGUAAggggGGcGGGUgGGGAAc -3'
miRNA:   3'- -UGGa--CUUUCCGUUa---CC-CCCAgCCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.