miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 3' -56.6 NC_006146.1 + 53548 0.66 0.863802
Target:  5'- gACC-GAGGGGCuucUGGGGGUgaCGGuGAu -3'
miRNA:   3'- -UGGaCUUUCCGuu-ACCCCCA--GCC-CUu -5'
29003 3' -56.6 NC_006146.1 + 55023 0.73 0.498314
Target:  5'- --aUGGGggcGGGCGggAUGGGGGUCGGGGc -3'
miRNA:   3'- uggACUU---UCCGU--UACCCCCAGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 57319 0.7 0.670101
Target:  5'- gACCUGGAcgcguGGCucucUGGGGG-CGGGGc -3'
miRNA:   3'- -UGGACUUu----CCGuu--ACCCCCaGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 61827 0.69 0.740352
Target:  5'- gGCgCUGGugGGGGCAGUGGGGcugguGcCGGGAc -3'
miRNA:   3'- -UG-GACU--UUCCGUUACCCC-----CaGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 69524 0.71 0.618799
Target:  5'- gGCCUGugguGAGG-AAUGGGGGgUGGGGg -3'
miRNA:   3'- -UGGACu---UUCCgUUACCCCCaGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 75243 0.73 0.517806
Target:  5'- aGCCUGAccGAGGCGggcGUGGGGugcaCGGGGAu -3'
miRNA:   3'- -UGGACU--UUCCGU---UACCCCca--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 89581 0.66 0.856114
Target:  5'- --aUGAGGGGgaugcCGAUGGGGGU-GGGAGu -3'
miRNA:   3'- uggACUUUCC-----GUUACCCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 117239 0.67 0.823387
Target:  5'- uCCUGGAaagcggccgGGGCcagGGGGGUCGGc-- -3'
miRNA:   3'- uGGACUU---------UCCGuuaCCCCCAGCCcuu -5'
29003 3' -56.6 NC_006146.1 + 126003 0.66 0.856114
Target:  5'- gGCUUGGgagugGGGGCGGUGGgcuucugcugcuGGGcCGGGAGg -3'
miRNA:   3'- -UGGACU-----UUCCGUUACC------------CCCaGCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 131618 0.67 0.831851
Target:  5'- -gCUGu--GGUAGUGGGGGUgaugguaguggcCGGGAu -3'
miRNA:   3'- ugGACuuuCCGUUACCCCCA------------GCCCUu -5'
29003 3' -56.6 NC_006146.1 + 132849 0.66 0.87128
Target:  5'- gGCCUcucaucacagGAGAGGU---GGGGGUgGGGGu -3'
miRNA:   3'- -UGGA----------CUUUCCGuuaCCCCCAgCCCUu -5'
29003 3' -56.6 NC_006146.1 + 136002 0.66 0.885581
Target:  5'- aACCguaagggagGggGGGUAggGGGGGgaGGGAu -3'
miRNA:   3'- -UGGa--------CuuUCCGUuaCCCCCagCCCUu -5'
29003 3' -56.6 NC_006146.1 + 137400 0.66 0.863802
Target:  5'- gGCCgGGAGGGUGcUGGGGuccCGGGGAc -3'
miRNA:   3'- -UGGaCUUUCCGUuACCCCca-GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 137640 0.7 0.649614
Target:  5'- cACCUGGAAGGCAAgcGGGuUCGuGGAGc -3'
miRNA:   3'- -UGGACUUUCCGUUacCCCcAGC-CCUU- -5'
29003 3' -56.6 NC_006146.1 + 137833 0.86 0.088198
Target:  5'- cACCUGGAAGGCAG-GGGGGcUCGGGGu -3'
miRNA:   3'- -UGGACUUUCCGUUaCCCCC-AGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 139099 0.66 0.863802
Target:  5'- cGCCUGGAguuGGGUugcGUGGGGuGUCaauuGGGGg -3'
miRNA:   3'- -UGGACUU---UCCGu--UACCCC-CAG----CCCUu -5'
29003 3' -56.6 NC_006146.1 + 141273 0.75 0.386901
Target:  5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3'
miRNA:   3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 141426 0.7 0.670101
Target:  5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3'
miRNA:   3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 141528 0.68 0.759708
Target:  5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3'
miRNA:   3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 141622 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.