Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29003 | 3' | -56.6 | NC_006146.1 | + | 141813 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144283 | 0.71 | 0.628043 |
Target: 5'- gACCUcAGAGGCAcucucggAUGuGGGGUgGGGGAu -3' miRNA: 3'- -UGGAcUUUCCGU-------UAC-CCCCAgCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144351 | 0.75 | 0.386901 |
Target: 5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3' miRNA: 3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144504 | 0.7 | 0.670101 |
Target: 5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3' miRNA: 3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144606 | 0.68 | 0.759708 |
Target: 5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3' miRNA: 3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144700 | 0.69 | 0.700576 |
Target: 5'- uGCCUG-GAGGCGAgacUGGGcGGcugCGGGGGa -3' miRNA: 3'- -UGGACuUUCCGUU---ACCC-CCa--GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144768 | 0.66 | 0.870542 |
Target: 5'- gGCCUGAuggacccggugggGAGaCAAgcugagGGGGGcCGGGGAg -3' miRNA: 3'- -UGGACU-------------UUCcGUUa-----CCCCCaGCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 144891 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 147429 | 0.75 | 0.386901 |
Target: 5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3' miRNA: 3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 147582 | 0.7 | 0.670101 |
Target: 5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3' miRNA: 3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 147684 | 0.66 | 0.863802 |
Target: 5'- gGCCUGGGAGGCugguucUGGGcuGGacUUGGGAc -3' miRNA: 3'- -UGGACUUUCCGuu----ACCC--CC--AGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 147777 | 0.69 | 0.740352 |
Target: 5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3' miRNA: 3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 147846 | 0.66 | 0.870542 |
Target: 5'- gGCCUGAuggacccggugggGAGaCAAgcugagGGGGGcCGGGGAg -3' miRNA: 3'- -UGGACU-------------UUCcGUUa-----CCCCCaGCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 147969 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 150507 | 0.75 | 0.386901 |
Target: 5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3' miRNA: 3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 150660 | 0.7 | 0.670101 |
Target: 5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3' miRNA: 3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 150761 | 0.68 | 0.759708 |
Target: 5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3' miRNA: 3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 150855 | 0.69 | 0.740352 |
Target: 5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3' miRNA: 3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 150924 | 0.66 | 0.870542 |
Target: 5'- gGCCUGAuggacccggugggGAGaCAAgcugagGGGGGcCGGGGAg -3' miRNA: 3'- -UGGACU-------------UUCcGUUa-----CCCCCaGCCCUU- -5' |
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29003 | 3' | -56.6 | NC_006146.1 | + | 151047 | 0.69 | 0.750082 |
Target: 5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3' miRNA: 3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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