miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 3' -56.6 NC_006146.1 + 170409 0.69 0.730528
Target:  5'- gGCCUcGGGGGCGGaggGGGGGgucccgCGGGGc -3'
miRNA:   3'- -UGGAcUUUCCGUUa--CCCCCa-----GCCCUu -5'
29003 3' -56.6 NC_006146.1 + 170207 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 169548 0.71 0.608537
Target:  5'- gACCcGAGGGGCGAgcgGGGGGcuucccCGGGGc -3'
miRNA:   3'- -UGGaCUUUCCGUUa--CCCCCa-----GCCCUu -5'
29003 3' -56.6 NC_006146.1 + 169478 0.69 0.730528
Target:  5'- gGCCUcGGGGGCGGaggGGGGGgucccgCGGGGc -3'
miRNA:   3'- -UGGAcUUUCCGUUa--CCCCCa-----GCCCUu -5'
29003 3' -56.6 NC_006146.1 + 169276 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 168616 0.71 0.608537
Target:  5'- gACCcGAGGGGCGAgcgGGGGGcuucccCGGGGc -3'
miRNA:   3'- -UGGaCUUUCCGUUa--CCCCCa-----GCCCUu -5'
29003 3' -56.6 NC_006146.1 + 168546 0.69 0.730528
Target:  5'- gGCCUcGGGGGCGGaggGGGGGgucccgCGGGGc -3'
miRNA:   3'- -UGGAcUUUCCGUUa--CCCCCa-----GCCCUu -5'
29003 3' -56.6 NC_006146.1 + 168344 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 167683 0.71 0.608537
Target:  5'- gACCcGAGGGGCGAgcgGGGGGcuucccCGGGGc -3'
miRNA:   3'- -UGGaCUUUCCGUUa--CCCCCa-----GCCCUu -5'
29003 3' -56.6 NC_006146.1 + 167614 0.69 0.730528
Target:  5'- gGCCUcGGGGGCGGaggGGGGGgucccgCGGGGc -3'
miRNA:   3'- -UGGAcUUUCCGUUa--CCCCCa-----GCCCUu -5'
29003 3' -56.6 NC_006146.1 + 167412 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 166686 0.67 0.831851
Target:  5'- gGCCUGGcaggggggagacGGGGCAAUGGGaGGg-GGGu- -3'
miRNA:   3'- -UGGACU------------UUCCGUUACCC-CCagCCCuu -5'
29003 3' -56.6 NC_006146.1 + 163617 0.66 0.856114
Target:  5'- gGCCUcuccccGGAAGGC-GUGGGGcaggauuuuuGUUGGGAAu -3'
miRNA:   3'- -UGGA------CUUUCCGuUACCCC----------CAGCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 161715 0.67 0.831851
Target:  5'- uCCUGGgagAAGGCu-UGGGGGUggguggcacggUGGGAGc -3'
miRNA:   3'- uGGACU---UUCCGuuACCCCCA-----------GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 157203 0.69 0.750082
Target:  5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3'
miRNA:   3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5'
29003 3' -56.6 NC_006146.1 + 157080 0.66 0.870542
Target:  5'- gGCCUGAuggacccggugggGAGaCAAgcugagGGGGGcCGGGGAg -3'
miRNA:   3'- -UGGACU-------------UUCcGUUa-----CCCCCaGCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 157011 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 156917 0.68 0.759708
Target:  5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3'
miRNA:   3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 156815 0.7 0.670101
Target:  5'- gGCCUGggGuGGCcgggGaGGGGUgGGGAGu -3'
miRNA:   3'- -UGGACuuU-CCGuua-C-CCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 156663 0.75 0.380237
Target:  5'- cCCUGGAcguguGGGCGAgguuuggggcggcUGGGGGUCGGGc- -3'
miRNA:   3'- uGGACUU-----UCCGUU-------------ACCCCCAGCCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.