miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 3' -56.6 NC_006146.1 + 33460 1.06 0.003925
Target:  5'- cACCUGAAAGGCAAUGGGGGUCGGGAAg -3'
miRNA:   3'- -UGGACUUUCCGUUACCCCCAGCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 57319 0.7 0.670101
Target:  5'- gACCUGGAcgcguGGCucucUGGGGG-CGGGGc -3'
miRNA:   3'- -UGGACUUu----CCGuu--ACCCCCaGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 42531 0.69 0.730528
Target:  5'- uGCCUGAAcuuuGGGaagcaGAcgGGGGGUgGGGGGg -3'
miRNA:   3'- -UGGACUU----UCCg----UUa-CCCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 132849 0.66 0.87128
Target:  5'- gGCCUcucaucacagGAGAGGU---GGGGGUgGGGGu -3'
miRNA:   3'- -UGGA----------CUUUCCGuuaCCCCCAgCCCUu -5'
29003 3' -56.6 NC_006146.1 + 137833 0.86 0.088198
Target:  5'- cACCUGGAAGGCAG-GGGGGcUCGGGGu -3'
miRNA:   3'- -UGGACUUUCCGUUaCCCCC-AGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 55023 0.73 0.498314
Target:  5'- --aUGGGggcGGGCGggAUGGGGGUCGGGGc -3'
miRNA:   3'- uggACUU---UCCGU--UACCCCCAGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 167683 0.71 0.608537
Target:  5'- gACCcGAGGGGCGAgcgGGGGGcuucccCGGGGc -3'
miRNA:   3'- -UGGaCUUUCCGUUa--CCCCCa-----GCCCUu -5'
29003 3' -56.6 NC_006146.1 + 168616 0.71 0.608537
Target:  5'- gACCcGAGGGGCGAgcgGGGGGcuucccCGGGGc -3'
miRNA:   3'- -UGGaCUUUCCGUUa--CCCCCa-----GCCCUu -5'
29003 3' -56.6 NC_006146.1 + 144283 0.71 0.628043
Target:  5'- gACCUcAGAGGCAcucucggAUGuGGGGUgGGGGAu -3'
miRNA:   3'- -UGGAcUUUCCGU-------UAC-CCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 170207 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 167412 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 69524 0.71 0.618799
Target:  5'- gGCCUGugguGAGG-AAUGGGGGgUGGGGg -3'
miRNA:   3'- -UGGACu---UUCCgUUACCCCCaGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 34003 0.94 0.025226
Target:  5'- cACCUGGAAGGCAGgggGGGGGUCGGGGc -3'
miRNA:   3'- -UGGACUUUCCGUUa--CCCCCAGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 168344 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 33630 0.9 0.048719
Target:  5'- cACCUGGAAGGCAAcGGGGGUgGGGGAg -3'
miRNA:   3'- -UGGACUUUCCGUUaCCCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 169548 0.71 0.608537
Target:  5'- gACCcGAGGGGCGAgcgGGGGGcuucccCGGGGc -3'
miRNA:   3'- -UGGaCUUUCCGUUa--CCCCCa-----GCCCUu -5'
29003 3' -56.6 NC_006146.1 + 169276 0.7 0.653718
Target:  5'- gGCCUGGcgGGGGCcagcgcggggucccgGGgcgGGGGGUCGGGc- -3'
miRNA:   3'- -UGGACU--UUCCG---------------UUa--CCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 51072 0.69 0.71063
Target:  5'- uGCCgcugGAcagAAGGCAGUGGGGauGUUGaGGAAg -3'
miRNA:   3'- -UGGa---CU---UUCCGUUACCCC--CAGC-CCUU- -5'
29003 3' -56.6 NC_006146.1 + 33817 0.9 0.048719
Target:  5'- cACCUGGAAGGCAAcGGGGGUgGGGGAg -3'
miRNA:   3'- -UGGACUUUCCGUUaCCCCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 53044 0.72 0.577887
Target:  5'- cGCCgccGAGAGGUAAggggGGcGGGUgGGGAAc -3'
miRNA:   3'- -UGGa--CUUUCCGUUa---CC-CCCAgCCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.