miRNA display CGI


Results 41 - 60 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 3' -56.6 NC_006146.1 + 144768 0.66 0.870542
Target:  5'- gGCCUGAuggacccggugggGAGaCAAgcugagGGGGGcCGGGGAg -3'
miRNA:   3'- -UGGACU-------------UUCcGUUa-----CCCCCaGCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 40468 0.69 0.740352
Target:  5'- gGCCUGguGGGUGAaGGGGGgcagaGGGGc -3'
miRNA:   3'- -UGGACuuUCCGUUaCCCCCag---CCCUu -5'
29003 3' -56.6 NC_006146.1 + 61827 0.69 0.740352
Target:  5'- gGCgCUGGugGGGGCAGUGGGGcugguGcCGGGAc -3'
miRNA:   3'- -UG-GACU--UUCCGUUACCCC-----CaGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 147846 0.66 0.870542
Target:  5'- gGCCUGAuggacccggugggGAGaCAAgcugagGGGGGcCGGGGAg -3'
miRNA:   3'- -UGGACU-------------UUCcGUUa-----CCCCCaGCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 157080 0.66 0.870542
Target:  5'- gGCCUGAuggacccggugggGAGaCAAgcugagGGGGGcCGGGGAg -3'
miRNA:   3'- -UGGACU-------------UUCcGUUa-----CCCCCaGCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 11139 0.67 0.848221
Target:  5'- uACCUG-GGGGCGGUGGuGGUCacGGAGg -3'
miRNA:   3'- -UGGACuUUCCGUUACCcCCAGc-CCUU- -5'
29003 3' -56.6 NC_006146.1 + 144351 0.75 0.386901
Target:  5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3'
miRNA:   3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 157011 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 153933 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 150855 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 147777 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 141622 0.69 0.740352
Target:  5'- uGCCUG-GAGGCAGagacUGGGcGGcugCGGGGGa -3'
miRNA:   3'- -UGGACuUUCCGUU----ACCC-CCa--GCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 144891 0.69 0.750082
Target:  5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3'
miRNA:   3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5'
29003 3' -56.6 NC_006146.1 + 147969 0.69 0.750082
Target:  5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3'
miRNA:   3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5'
29003 3' -56.6 NC_006146.1 + 141813 0.69 0.750082
Target:  5'- gACCcGAGAGGCcgaaaGcgGGGGGggGGGAc -3'
miRNA:   3'- -UGGaCUUUCCG-----UuaCCCCCagCCCUu -5'
29003 3' -56.6 NC_006146.1 + 153839 0.68 0.759708
Target:  5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3'
miRNA:   3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 156917 0.68 0.759708
Target:  5'- gGCCUGGGAGGCugguucUGGGGcuggacUUGGGAc -3'
miRNA:   3'- -UGGACUUUCCGuu----ACCCCc-----AGCCCUu -5'
29003 3' -56.6 NC_006146.1 + 39899 0.68 0.805943
Target:  5'- gGCCUGcgGGGCGGgaaacgacgaGGaGGGUgGGGGAa -3'
miRNA:   3'- -UGGACuuUCCGUUa---------CC-CCCAgCCCUU- -5'
29003 3' -56.6 NC_006146.1 + 150507 0.75 0.386901
Target:  5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3'
miRNA:   3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5'
29003 3' -56.6 NC_006146.1 + 147429 0.75 0.386901
Target:  5'- cCCUGGAcguguGGGCGAgguuugggggcggcUGGGGGUCGGGc- -3'
miRNA:   3'- uGGACUU-----UCCGUU--------------ACCCCCAGCCCuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.