miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 44380 0.66 0.630965
Target:  5'- --cCCCCgcccggggggcguguGGGGCCgggcaCGGCGCCUUCCUc -3'
miRNA:   3'- ccaGGGG---------------CCCUGGg----GUCGUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 132986 0.66 0.630015
Target:  5'- uGUCCCUGcuuagcagcucCCCCAGCGCCgugaaggcaggacuCUCCCa -3'
miRNA:   3'- cCAGGGGCccu--------GGGGUCGUGG--------------GAGGG- -5'
29003 5' -64.3 NC_006146.1 + 137663 0.66 0.627168
Target:  5'- cGG-CCCgGcGGACCcgCCGGCGgCCaCCCg -3'
miRNA:   3'- -CCaGGGgC-CCUGG--GGUCGUgGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 121023 0.66 0.627168
Target:  5'- --aCCUgGaGGACCCCAGC---CUCCCg -3'
miRNA:   3'- ccaGGGgC-CCUGGGGUCGuggGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 84989 0.66 0.627168
Target:  5'- aGG-CCCCaGGGuaaaGCCCC-GCGgCUCUCUCa -3'
miRNA:   3'- -CCaGGGG-CCC----UGGGGuCGU-GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 124409 0.66 0.627168
Target:  5'- --cCUCCGGGcucaAgCCCGGCACCUUUgCCa -3'
miRNA:   3'- ccaGGGGCCC----UgGGGUCGUGGGAG-GG- -5'
29003 5' -64.3 NC_006146.1 + 11050 0.66 0.626219
Target:  5'- aGGUgUuuGGGuacgacgGCUaCAGCGCCCUCUCu -3'
miRNA:   3'- -CCAgGggCCC-------UGGgGUCGUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 147972 0.66 0.624321
Target:  5'- -uUCCCUGGauggucgugugcauGGCCCUcguGGgGCCUUCCCu -3'
miRNA:   3'- ccAGGGGCC--------------CUGGGG---UCgUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 135263 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 135170 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 135449 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 135913 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 135820 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 135635 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 135542 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 65695 0.66 0.61768
Target:  5'- cGUCUcaggcaCCGGGcacCCCCGGCucCCCggcCCCg -3'
miRNA:   3'- cCAGG------GGCCCu--GGGGUCGu-GGGa--GGG- -5'
29003 5' -64.3 NC_006146.1 + 73157 0.66 0.61768
Target:  5'- aGUgCaguaGGGugaggcGCCCCAGCA-CCUCCCg -3'
miRNA:   3'- cCAgGgg--CCC------UGGGGUCGUgGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 15111 0.66 0.61768
Target:  5'- uGGcCCCCaGGGCCaCCgAGCGgCUCUUCUg -3'
miRNA:   3'- -CCaGGGGcCCUGG-GG-UCGU-GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 113519 0.66 0.61768
Target:  5'- cGGUCg-CGGGGCCagcccaCCGGCGCcaccgccgcagCCUCCCu -3'
miRNA:   3'- -CCAGggGCCCUGG------GGUCGUG-----------GGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 126534 0.66 0.61768
Target:  5'- --cCCCCGGGcgggGgUCUGGCACCUcgUCCCc -3'
miRNA:   3'- ccaGGGGCCC----UgGGGUCGUGGG--AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.