miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 44380 0.66 0.630965
Target:  5'- --cCCCCgcccggggggcguguGGGGCCgggcaCGGCGCCUUCCUc -3'
miRNA:   3'- ccaGGGG---------------CCCUGGg----GUCGUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 8901 0.66 0.608201
Target:  5'- cGGUCuCCCaGGGugCCUAucCACCguggagccgguCUCCCa -3'
miRNA:   3'- -CCAG-GGG-CCCugGGGUc-GUGG-----------GAGGG- -5'
29003 5' -64.3 NC_006146.1 + 3282 0.66 0.608201
Target:  5'- --nCCgCGGGACCCCc---CCCUCCg -3'
miRNA:   3'- ccaGGgGCCCUGGGGucguGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 2350 0.66 0.608201
Target:  5'- --nCCgCGGGACCCCc---CCCUCCg -3'
miRNA:   3'- ccaGGgGCCCUGGGGucguGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 1418 0.66 0.608201
Target:  5'- --nCCgCGGGACCCCc---CCCUCCg -3'
miRNA:   3'- ccaGGgGCCCUGGGGucguGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 487 0.66 0.608201
Target:  5'- --nCCgCGGGACCCCc---CCCUCCg -3'
miRNA:   3'- ccaGGgGCCCUGGGGucguGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 76105 0.66 0.607254
Target:  5'- --cCCCCGGG-CCUCGGCcuacguggacgugGCCCgcaacugggCCCu -3'
miRNA:   3'- ccaGGGGCCCuGGGGUCG-------------UGGGa--------GGG- -5'
29003 5' -64.3 NC_006146.1 + 33177 0.66 0.598737
Target:  5'- -cUCCagaaCCGGGuagGCCCgGGCACCC-CCg -3'
miRNA:   3'- ccAGG----GGCCC---UGGGgUCGUGGGaGGg -5'
29003 5' -64.3 NC_006146.1 + 62747 0.66 0.57988
Target:  5'- cGGagCCCCGcGGACCCaCAugaacGuCACCCUCa- -3'
miRNA:   3'- -CCa-GGGGC-CCUGGG-GU-----C-GUGGGAGgg -5'
29003 5' -64.3 NC_006146.1 + 114081 0.66 0.608201
Target:  5'- aGGccgCCUCGGGGgCCagaAGC-CCCgCCCg -3'
miRNA:   3'- -CCa--GGGGCCCUgGGg--UCGuGGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 73157 0.66 0.61768
Target:  5'- aGUgCaguaGGGugaggcGCCCCAGCA-CCUCCCg -3'
miRNA:   3'- cCAgGgg--CCC------UGGGGUCGUgGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 15111 0.66 0.61768
Target:  5'- uGGcCCCCaGGGCCaCCgAGCGgCUCUUCUg -3'
miRNA:   3'- -CCaGGGGcCCUGG-GG-UCGU-GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 137663 0.66 0.627168
Target:  5'- cGG-CCCgGcGGACCcgCCGGCGgCCaCCCg -3'
miRNA:   3'- -CCaGGGgC-CCUGG--GGUCGUgGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 121023 0.66 0.627168
Target:  5'- --aCCUgGaGGACCCCAGC---CUCCCg -3'
miRNA:   3'- ccaGGGgC-CCUGGGGUCGuggGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 84989 0.66 0.627168
Target:  5'- aGG-CCCCaGGGuaaaGCCCC-GCGgCUCUCUCa -3'
miRNA:   3'- -CCaGGGG-CCC----UGGGGuCGU-GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 11050 0.66 0.626219
Target:  5'- aGGUgUuuGGGuacgacgGCUaCAGCGCCCUCUCu -3'
miRNA:   3'- -CCAgGggCCC-------UGGgGUCGUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 126534 0.66 0.61768
Target:  5'- --cCCCCGGGcgggGgUCUGGCACCUcgUCCCc -3'
miRNA:   3'- ccaGGGGCCC----UgGGGUCGUGGG--AGGG- -5'
29003 5' -64.3 NC_006146.1 + 113519 0.66 0.61768
Target:  5'- cGGUCg-CGGGGCCagcccaCCGGCGCcaccgccgcagCCUCCCu -3'
miRNA:   3'- -CCAGggGCCCUGG------GGUCGUG-----------GGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 71868 0.66 0.61768
Target:  5'- cGGgCCCUggGGGGCCUCuacacGGCcgucacgcggACCCUCCUg -3'
miRNA:   3'- -CCaGGGG--CCCUGGGG-----UCG----------UGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 80734 0.66 0.61768
Target:  5'- -cUCCCCugccgcGGccucuACCUCGGCugCCUCCUg -3'
miRNA:   3'- ccAGGGGc-----CC-----UGGGGUCGugGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.