miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 32933 0.78 0.12354
Target:  5'- cGGcCCCCGGGAggCCCGGCcgcgAUCCUCCCc -3'
miRNA:   3'- -CCaGGGGCCCUg-GGGUCG----UGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 109057 0.77 0.129639
Target:  5'- --gCCCCGGGAgUCCCGGCACCagcCCCa -3'
miRNA:   3'- ccaGGGGCCCU-GGGGUCGUGGga-GGG- -5'
29003 5' -64.3 NC_006146.1 + 85256 0.77 0.142679
Target:  5'- gGGUCCCCGuGGGCCaaCCAGC-CCCUgUCu -3'
miRNA:   3'- -CCAGGGGC-CCUGG--GGUCGuGGGAgGG- -5'
29003 5' -64.3 NC_006146.1 + 158548 0.77 0.146122
Target:  5'- gGGUCCCUGGGGCUCCuucucCAgCUUCCCg -3'
miRNA:   3'- -CCAGGGGCCCUGGGGuc---GUgGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 3483 0.76 0.153235
Target:  5'- --gCCCCGGGACCCC-GCGCUggCCCc -3'
miRNA:   3'- ccaGGGGCCCUGGGGuCGUGGgaGGG- -5'
29003 5' -64.3 NC_006146.1 + 2551 0.76 0.153235
Target:  5'- --gCCCCGGGACCCC-GCGCUggCCCc -3'
miRNA:   3'- ccaGGGGCCCUGGGGuCGUGGgaGGG- -5'
29003 5' -64.3 NC_006146.1 + 1619 0.76 0.153235
Target:  5'- --gCCCCGGGACCCC-GCGCUggCCCc -3'
miRNA:   3'- ccaGGGGCCCUGGGGuCGUGGgaGGG- -5'
29003 5' -64.3 NC_006146.1 + 688 0.76 0.153235
Target:  5'- --gCCCCGGGACCCC-GCGCUggCCCc -3'
miRNA:   3'- ccaGGGGCCCUGGGGuCGUGGgaGGG- -5'
29003 5' -64.3 NC_006146.1 + 13635 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 29024 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 16713 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 22869 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 19791 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 137246 0.76 0.160661
Target:  5'- gGGUCCCgGGGACCaCA-C-CCCUCCCu -3'
miRNA:   3'- -CCAGGGgCCCUGGgGUcGuGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 118995 0.76 0.167227
Target:  5'- cGGUgCCUCGGaGGCCCCcGCcgacgcagccuccaGCCCUCCCc -3'
miRNA:   3'- -CCA-GGGGCC-CUGGGGuCG--------------UGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 136827 0.76 0.172409
Target:  5'- --cCCCCGGGAcCCCCGGC-CCCgugCCa -3'
miRNA:   3'- ccaGGGGCCCU-GGGGUCGuGGGa--GGg -5'
29003 5' -64.3 NC_006146.1 + 54509 0.75 0.180661
Target:  5'- -cUCCCCaGGGCCCC-GCuCCCUCCUc -3'
miRNA:   3'- ccAGGGGcCCUGGGGuCGuGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 16602 0.75 0.184917
Target:  5'- cGUCCCgagaaGGGACCCgAGCAgCCCcgUCCCc -3'
miRNA:   3'- cCAGGGg----CCCUGGGgUCGU-GGG--AGGG- -5'
29003 5' -64.3 NC_006146.1 + 19680 0.75 0.184917
Target:  5'- cGUCCCgagaaGGGACCCgAGCAgCCCcgUCCCc -3'
miRNA:   3'- cCAGGGg----CCCUGGGgUCGU-GGG--AGGG- -5'
29003 5' -64.3 NC_006146.1 + 13524 0.75 0.184917
Target:  5'- cGUCCCgagaaGGGACCCgAGCAgCCCcgUCCCc -3'
miRNA:   3'- cCAGGGg----CCCUGGGgUCGU-GGG--AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.