miRNA display CGI


Results 41 - 60 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 16602 0.75 0.184917
Target:  5'- cGUCCCgagaaGGGACCCgAGCAgCCCcgUCCCc -3'
miRNA:   3'- cCAGGGg----CCCUGGGgUCGU-GGG--AGGG- -5'
29003 5' -64.3 NC_006146.1 + 25836 0.75 0.184917
Target:  5'- cGUCCCgagaaGGGACCCgAGCAgCCCcgUCCCc -3'
miRNA:   3'- cCAGGGg----CCCUGGGgUCGU-GGG--AGGG- -5'
29003 5' -64.3 NC_006146.1 + 167880 0.75 0.189261
Target:  5'- gGGgagCCCCGGGgcgGCCCgGGgACCCUCgCg -3'
miRNA:   3'- -CCa--GGGGCCC---UGGGgUCgUGGGAGgG- -5'
29003 5' -64.3 NC_006146.1 + 169744 0.75 0.189261
Target:  5'- gGGgagCCCCGGGgcgGCCCgGGgACCCUCgCg -3'
miRNA:   3'- -CCa--GGGGCCC---UGGGgUCgUGGGAGgG- -5'
29003 5' -64.3 NC_006146.1 + 168812 0.75 0.189261
Target:  5'- gGGgagCCCCGGGgcgGCCCgGGgACCCUCgCg -3'
miRNA:   3'- -CCa--GGGGCCC---UGGGgUCgUGGGAGgG- -5'
29003 5' -64.3 NC_006146.1 + 25944 0.75 0.193248
Target:  5'- aGGagCCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCa-GGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 28914 0.75 0.193695
Target:  5'- cGUCCCgagaaGGGACCCgAGCAgCCCcgCCCc -3'
miRNA:   3'- cCAGGGg----CCCUGGGgUCGU-GGGa-GGG- -5'
29003 5' -64.3 NC_006146.1 + 164464 0.74 0.202836
Target:  5'- gGGcCCCauGGACCCCAGgGCCCacauggCCCu -3'
miRNA:   3'- -CCaGGGgcCCUGGGGUCgUGGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 48641 0.74 0.202836
Target:  5'- gGGcUCCgggCGGGugCCCAGCGCCUUCUg -3'
miRNA:   3'- -CC-AGGg--GCCCugGGGUCGUGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 167634 0.74 0.212349
Target:  5'- gGGUCCCgCGGGG-CCCGGCGCgugCCgggggCCCg -3'
miRNA:   3'- -CCAGGG-GCCCUgGGGUCGUG---GGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 17499 0.74 0.217248
Target:  5'- cGcCCCCGGGAacUCCCuuGGCACCCUCa- -3'
miRNA:   3'- cCaGGGGCCCU--GGGG--UCGUGGGAGgg -5'
29003 5' -64.3 NC_006146.1 + 125794 0.74 0.222243
Target:  5'- cGGUCaCCGGccgaGCCggagaauggCCGGCACCCUCCCu -3'
miRNA:   3'- -CCAGgGGCCc---UGG---------GGUCGUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 457 0.74 0.227336
Target:  5'- cGcCCCCGGGucCCCCGGCACgcgCCgggCCCc -3'
miRNA:   3'- cCaGGGGCCCu-GGGGUCGUG---GGa--GGG- -5'
29003 5' -64.3 NC_006146.1 + 1388 0.74 0.227336
Target:  5'- cGcCCCCGGGucCCCCGGCACgcgCCgggCCCc -3'
miRNA:   3'- cCaGGGGCCCu-GGGGUCGUG---GGa--GGG- -5'
29003 5' -64.3 NC_006146.1 + 2320 0.74 0.227336
Target:  5'- cGcCCCCGGGucCCCCGGCACgcgCCgggCCCc -3'
miRNA:   3'- cCaGGGGCCCu-GGGGUCGUG---GGa--GGG- -5'
29003 5' -64.3 NC_006146.1 + 3252 0.74 0.227336
Target:  5'- cGcCCCCGGGucCCCCGGCACgcgCCgggCCCc -3'
miRNA:   3'- cCaGGGGCCCu-GGGGUCGUG---GGa--GGG- -5'
29003 5' -64.3 NC_006146.1 + 124864 0.74 0.227336
Target:  5'- cGUCCCCuggaGGGCCCCGuCGCCUUCCa -3'
miRNA:   3'- cCAGGGGc---CCUGGGGUcGUGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 156072 0.74 0.227336
Target:  5'- cGG-CCCCGGG-CCCgAGaccguGCCCUCCUc -3'
miRNA:   3'- -CCaGGGGCCCuGGGgUCg----UGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 98330 0.74 0.227336
Target:  5'- --aCCCCGGcaaGCCCCAGCACCaCgccggcgCCCa -3'
miRNA:   3'- ccaGGGGCCc--UGGGGUCGUGG-Ga------GGG- -5'
29003 5' -64.3 NC_006146.1 + 144755 0.74 0.230959
Target:  5'- aGcCCCCGugcucuuuccgaccGGGCCCCGGUGCCUUUCCa -3'
miRNA:   3'- cCaGGGGC--------------CCUGGGGUCGUGGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.