miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 137400 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 137214 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 136006 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 136749 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 135913 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 126534 0.66 0.61768
Target:  5'- --cCCCCGGGcgggGgUCUGGCACCUcgUCCCc -3'
miRNA:   3'- ccaGGGGCCC----UgGGGUCGUGGG--AGGG- -5'
29003 5' -64.3 NC_006146.1 + 113519 0.66 0.61768
Target:  5'- cGGUCg-CGGGGCCagcccaCCGGCGCcaccgccgcagCCUCCCu -3'
miRNA:   3'- -CCAGggGCCCUGG------GGUCGUG-----------GGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 71868 0.66 0.61768
Target:  5'- cGGgCCCUggGGGGCCUCuacacGGCcgucacgcggACCCUCCUg -3'
miRNA:   3'- -CCaGGGG--CCCUGGGG-----UCG----------UGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 80734 0.66 0.61768
Target:  5'- -cUCCCCugccgcGGccucuACCUCGGCugCCUCCUg -3'
miRNA:   3'- ccAGGGGc-----CC-----UGGGGUCGugGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 15111 0.66 0.61768
Target:  5'- uGGcCCCCaGGGCCaCCgAGCGgCUCUUCUg -3'
miRNA:   3'- -CCaGGGGcCCUGG-GG-UCGU-GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 73157 0.66 0.61768
Target:  5'- aGUgCaguaGGGugaggcGCCCCAGCA-CCUCCCg -3'
miRNA:   3'- cCAgGgg--CCC------UGGGGUCGUgGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 137028 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 137493 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 137121 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 137307 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 136935 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 136657 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 136192 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 135820 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 135542 0.66 0.61768
Target:  5'- cGGUCCuggagcucggggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG------------GGCCCUgGGgUCGUGGGa----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.