miRNA display CGI


Results 41 - 60 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 127265 0.66 0.616731
Target:  5'- -cUCCCCaGGcggccacGCCCCGcCGCCCacUCCCu -3'
miRNA:   3'- ccAGGGGcCC-------UGGGGUcGUGGG--AGGG- -5'
29003 5' -64.3 NC_006146.1 + 92953 0.66 0.611991
Target:  5'- cGG-CUCCGGcccagaccaaacagcGAcCCCCGGCACCUgcgaggccgCCCg -3'
miRNA:   3'- -CCaGGGGCC---------------CU-GGGGUCGUGGGa--------GGG- -5'
29003 5' -64.3 NC_006146.1 + 3282 0.66 0.608201
Target:  5'- --nCCgCGGGACCCCc---CCCUCCg -3'
miRNA:   3'- ccaGGgGCCCUGGGGucguGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 2350 0.66 0.608201
Target:  5'- --nCCgCGGGACCCCc---CCCUCCg -3'
miRNA:   3'- ccaGGgGCCCUGGGGucguGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 1418 0.66 0.608201
Target:  5'- --nCCgCGGGACCCCc---CCCUCCg -3'
miRNA:   3'- ccaGGgGCCCUGGGGucguGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 487 0.66 0.608201
Target:  5'- --nCCgCGGGACCCCc---CCCUCCg -3'
miRNA:   3'- ccaGGgGCCCUGGGGucguGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 142998 0.66 0.608201
Target:  5'- uGG-CCgUGGGAgcagcUCCCGGUcCCCUCCg -3'
miRNA:   3'- -CCaGGgGCCCU-----GGGGUCGuGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 8901 0.66 0.608201
Target:  5'- cGGUCuCCCaGGGugCCUAucCACCguggagccgguCUCCCa -3'
miRNA:   3'- -CCAG-GGG-CCCugGGGUc-GUGG-----------GAGGG- -5'
29003 5' -64.3 NC_006146.1 + 114081 0.66 0.608201
Target:  5'- aGGccgCCUCGGGGgCCagaAGC-CCCgCCCg -3'
miRNA:   3'- -CCa--GGGGCCCUgGGg--UCGuGGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 137586 0.66 0.608201
Target:  5'- cGGUCCuggagcucgggCCGGGGgCCgGGUGCCCcugggUCCg -3'
miRNA:   3'- -CCAGG-----------GGCCCUgGGgUCGUGGGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 76105 0.66 0.607254
Target:  5'- --cCCCCGGG-CCUCGGCcuacguggacgugGCCCgcaacugggCCCu -3'
miRNA:   3'- ccaGGGGCCCuGGGGUCG-------------UGGGa--------GGG- -5'
29003 5' -64.3 NC_006146.1 + 162484 0.66 0.598737
Target:  5'- uGGUCCCCaGGG--UCCGGacuaugaagACCCUCCUc -3'
miRNA:   3'- -CCAGGGG-CCCugGGGUCg--------UGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 16135 0.66 0.598737
Target:  5'- --aCUCCGGG-CCCCaaGGCGgCCgCCCu -3'
miRNA:   3'- ccaGGGGCCCuGGGG--UCGUgGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 22291 0.66 0.598737
Target:  5'- --aCUCCGGG-CCCCaaGGCGgCCgCCCu -3'
miRNA:   3'- ccaGGGGCCCuGGGG--UCGUgGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 28447 0.66 0.598737
Target:  5'- --aCUCCGGG-CCCCaaGGCGgCCgCCCu -3'
miRNA:   3'- ccaGGGGCCCuGGGG--UCGUgGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 19213 0.66 0.598737
Target:  5'- --aCUCCGGG-CCCCaaGGCGgCCgCCCu -3'
miRNA:   3'- ccaGGGGCCCuGGGG--UCGUgGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 13057 0.66 0.598737
Target:  5'- --aCUCCGGG-CCCCaaGGCGgCCgCCCu -3'
miRNA:   3'- ccaGGGGCCCuGGGG--UCGUgGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 33177 0.66 0.598737
Target:  5'- -cUCCagaaCCGGGuagGCCCgGGCACCC-CCg -3'
miRNA:   3'- ccAGG----GGCCC---UGGGgUCGUGGGaGGg -5'
29003 5' -64.3 NC_006146.1 + 25369 0.66 0.598737
Target:  5'- --aCUCCGGG-CCCCaaGGCGgCCgCCCu -3'
miRNA:   3'- ccaGGGGCCCuGGGG--UCGUgGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 86153 0.66 0.597792
Target:  5'- aGG-CCUCGGagugagaGGCCCCuGCAUCaUCCCu -3'
miRNA:   3'- -CCaGGGGCC-------CUGGGGuCGUGGgAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.