miRNA display CGI


Results 61 - 80 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 159087 0.66 0.595902
Target:  5'- gGGUCCCaCcuuccccuccugcaGGGuCCCCAGC-CCCUgUg -3'
miRNA:   3'- -CCAGGG-G--------------CCCuGGGGUCGuGGGAgGg -5'
29003 5' -64.3 NC_006146.1 + 31423 0.66 0.589295
Target:  5'- --cCCCCGGGugccguggagACCUUcuccagugcaGGCACCCcCCCg -3'
miRNA:   3'- ccaGGGGCCC----------UGGGG----------UCGUGGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 33250 0.66 0.589295
Target:  5'- gGGUCCgCCGGG-CCgCuGCcCCgCUCCg -3'
miRNA:   3'- -CCAGG-GGCCCuGGgGuCGuGG-GAGGg -5'
29003 5' -64.3 NC_006146.1 + 33372 0.66 0.589295
Target:  5'- gGGUCCgCCGGG-CCgCuGCcCCgCUCCg -3'
miRNA:   3'- -CCAGG-GGCCCuGGgGuCGuGG-GAGGg -5'
29003 5' -64.3 NC_006146.1 + 135015 0.66 0.589295
Target:  5'- uGGUCCgCGucACCCCAcCACCC-CCa -3'
miRNA:   3'- -CCAGGgGCccUGGGGUcGUGGGaGGg -5'
29003 5' -64.3 NC_006146.1 + 69303 0.66 0.589295
Target:  5'- gGGUUCUgGGG--CCCAGUACUCUCgCg -3'
miRNA:   3'- -CCAGGGgCCCugGGGUCGUGGGAGgG- -5'
29003 5' -64.3 NC_006146.1 + 129189 0.66 0.588352
Target:  5'- aGGUaCCaguacucauCCGGGACCuugcgcgCCAGCACCCgauucgugcgguUUCCa -3'
miRNA:   3'- -CCA-GG---------GGCCCUGG-------GGUCGUGGG------------AGGG- -5'
29003 5' -64.3 NC_006146.1 + 37389 0.66 0.588352
Target:  5'- gGGUCUuaGcaGGCCCCaAGCcccgcgaACCCUCCCu -3'
miRNA:   3'- -CCAGGggCc-CUGGGG-UCG-------UGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 16195 0.66 0.586467
Target:  5'- gGGUCCggccucucCUGGGgcagcaggcucaacACCCCGGa--CCUCCCa -3'
miRNA:   3'- -CCAGG--------GGCCC--------------UGGGGUCgugGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 28507 0.66 0.586467
Target:  5'- gGGUCCggccucucCUGGGgcagcaggcucaacACCCCGGa--CCUCCCa -3'
miRNA:   3'- -CCAGG--------GGCCC--------------UGGGGUCgugGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 25429 0.66 0.586467
Target:  5'- gGGUCCggccucucCUGGGgcagcaggcucaacACCCCGGa--CCUCCCa -3'
miRNA:   3'- -CCAGG--------GGCCC--------------UGGGGUCgugGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 22351 0.66 0.586467
Target:  5'- gGGUCCggccucucCUGGGgcagcaggcucaacACCCCGGa--CCUCCCa -3'
miRNA:   3'- -CCAGG--------GGCCC--------------UGGGGUCgugGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 13117 0.66 0.586467
Target:  5'- gGGUCCggccucucCUGGGgcagcaggcucaacACCCCGGa--CCUCCCa -3'
miRNA:   3'- -CCAGG--------GGCCC--------------UGGGGUCgugGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 19273 0.66 0.586467
Target:  5'- gGGUCCggccucucCUGGGgcagcaggcucaacACCCCGGa--CCUCCCa -3'
miRNA:   3'- -CCAGG--------GGCCC--------------UGGGGUCgugGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 169998 0.66 0.583642
Target:  5'- gGGUCCCgGGGGgcggcgcgcggccuuCCCCcGUcUgCUCCCg -3'
miRNA:   3'- -CCAGGGgCCCU---------------GGGGuCGuGgGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 169066 0.66 0.583642
Target:  5'- gGGUCCCgGGGGgcggcgcgcggccuuCCCCcGUcUgCUCCCg -3'
miRNA:   3'- -CCAGGGgCCCU---------------GGGGuCGuGgGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 168134 0.66 0.583642
Target:  5'- gGGUCCCgGGGGgcggcgcgcggccuuCCCCcGUcUgCUCCCg -3'
miRNA:   3'- -CCAGGGgCCCU---------------GGGGuCGuGgGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 167202 0.66 0.583642
Target:  5'- gGGUCCCgGGGGgcggcgcgcggccuuCCCCcGUcUgCUCCCg -3'
miRNA:   3'- -CCAGGGgCCCU---------------GGGGuCGuGgGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 3379 0.66 0.57988
Target:  5'- aGGggCCgGGGGCgcggCCCGGCGCCagCCCu -3'
miRNA:   3'- -CCagGGgCCCUG----GGGUCGUGGgaGGG- -5'
29003 5' -64.3 NC_006146.1 + 62747 0.66 0.57988
Target:  5'- cGGagCCCCGcGGACCCaCAugaacGuCACCCUCa- -3'
miRNA:   3'- -CCa-GGGGC-CCUGGG-GU-----C-GUGGGAGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.