miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 224 0.79 0.094512
Target:  5'- cGGUCCCCGGGGCgCCCcuGGCcUCC-CCCg -3'
miRNA:   3'- -CCAGGGGCCCUG-GGG--UCGuGGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 295 0.7 0.396158
Target:  5'- --aCCCgGGGGCgggCCCGGCGCgCUCgCCa -3'
miRNA:   3'- ccaGGGgCCCUG---GGGUCGUGgGAG-GG- -5'
29003 5' -64.3 NC_006146.1 + 457 0.74 0.227336
Target:  5'- cGcCCCCGGGucCCCCGGCACgcgCCgggCCCc -3'
miRNA:   3'- cCaGGGGCCCu-GGGGUCGUG---GGa--GGG- -5'
29003 5' -64.3 NC_006146.1 + 487 0.66 0.608201
Target:  5'- --nCCgCGGGACCCCc---CCCUCCg -3'
miRNA:   3'- ccaGGgGCCCUGGGGucguGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 545 0.67 0.524237
Target:  5'- cGGccUCUCCGcGGGCCuCCAcacGUGgCCUCCCa -3'
miRNA:   3'- -CC--AGGGGC-CCUGG-GGU---CGUgGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 584 0.66 0.57988
Target:  5'- aGGggCCgGGGGCgcggCCCGGCGCCagCCCu -3'
miRNA:   3'- -CCagGGgCCCUG----GGGUCGUGGgaGGG- -5'
29003 5' -64.3 NC_006146.1 + 688 0.76 0.153235
Target:  5'- --gCCCCGGGACCCC-GCGCUggCCCc -3'
miRNA:   3'- ccaGGGGCCCUGGGGuCGUGGgaGGG- -5'
29003 5' -64.3 NC_006146.1 + 790 0.71 0.322756
Target:  5'- cGGgacgCCCCGccGGCCCCcccugcggcgccGGC-CCCUCCCg -3'
miRNA:   3'- -CCa---GGGGCc-CUGGGG------------UCGuGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 839 0.71 0.329619
Target:  5'- -aUCCCCacgcGcGGCCCCGG-GCCCUCCCc -3'
miRNA:   3'- ccAGGGGc---C-CUGGGGUCgUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 918 0.82 0.058849
Target:  5'- --cCCCCGGGACCCCgGGCGCgcgccggCCUCCCg -3'
miRNA:   3'- ccaGGGGCCCUGGGG-UCGUG-------GGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 1155 0.85 0.039443
Target:  5'- gGGUCCCCGGGccGCCCCGGgGCUCcCCCg -3'
miRNA:   3'- -CCAGGGGCCC--UGGGGUCgUGGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 1212 0.69 0.434179
Target:  5'- gGGagCCCGGGAagaCCCGggggcgggccacgcGCGCCCgccacgCCCa -3'
miRNA:   3'- -CCagGGGCCCUg--GGGU--------------CGUGGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 1343 0.68 0.497172
Target:  5'- cGGgCCCCGGGgaaGCCCCc-CGCUCgCCCc -3'
miRNA:   3'- -CCaGGGGCCC---UGGGGucGUGGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 1388 0.74 0.227336
Target:  5'- cGcCCCCGGGucCCCCGGCACgcgCCgggCCCc -3'
miRNA:   3'- cCaGGGGCCCu-GGGGUCGUG---GGa--GGG- -5'
29003 5' -64.3 NC_006146.1 + 1418 0.66 0.608201
Target:  5'- --nCCgCGGGACCCCc---CCCUCCg -3'
miRNA:   3'- ccaGGgGCCCUGGGGucguGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 1476 0.67 0.524237
Target:  5'- cGGccUCUCCGcGGGCCuCCAcacGUGgCCUCCCa -3'
miRNA:   3'- -CC--AGGGGC-CCUGG-GGU---CGUgGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 1515 0.66 0.57988
Target:  5'- aGGggCCgGGGGCgcggCCCGGCGCCagCCCu -3'
miRNA:   3'- -CCagGGgCCCUG----GGGUCGUGGgaGGG- -5'
29003 5' -64.3 NC_006146.1 + 1619 0.76 0.153235
Target:  5'- --gCCCCGGGACCCC-GCGCUggCCCc -3'
miRNA:   3'- ccaGGGGCCCUGGGGuCGUGGgaGGG- -5'
29003 5' -64.3 NC_006146.1 + 1721 0.71 0.328928
Target:  5'- cGGgacgCCCCGccGGCCCCcccugcaggcgccGGC-CCCUCCCg -3'
miRNA:   3'- -CCa---GGGGCc-CUGGGG-------------UCGuGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 1771 0.71 0.329619
Target:  5'- -aUCCCCacgcGcGGCCCCGG-GCCCUCCCc -3'
miRNA:   3'- ccAGGGGc---C-CUGGGGUCgUGGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.