miRNA display CGI


Results 41 - 60 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 3585 0.71 0.328928
Target:  5'- cGGgacgCCCCGccGGCCCCcccugcaggcgccGGC-CCCUCCCg -3'
miRNA:   3'- -CCa---GGGGCc-CUGGGG-------------UCGuGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 3635 0.71 0.329619
Target:  5'- -aUCCCCacgcGcGGCCCCGG-GCCCUCCCc -3'
miRNA:   3'- ccAGGGGc---C-CUGGGGUCgUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 3714 0.82 0.058849
Target:  5'- --cCCCCGGGACCCCgGGCGCgcgccggCCUCCCg -3'
miRNA:   3'- ccaGGGGCCCUGGGG-UCGUG-------GGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 6449 0.68 0.470752
Target:  5'- gGGUCCauGGGGCCCCAaCAacaaCCacggCCCa -3'
miRNA:   3'- -CCAGGggCCCUGGGGUcGUg---GGa---GGG- -5'
29003 5' -64.3 NC_006146.1 + 8901 0.66 0.608201
Target:  5'- cGGUCuCCCaGGGugCCUAucCACCguggagccgguCUCCCa -3'
miRNA:   3'- -CCAG-GGG-CCCugGGGUc-GUGG-----------GAGGG- -5'
29003 5' -64.3 NC_006146.1 + 9134 0.68 0.482995
Target:  5'- aGGcCCCCGcccaggcgcccccucGGACCUCAGCcGCCaCcCCCg -3'
miRNA:   3'- -CCaGGGGC---------------CCUGGGGUCG-UGG-GaGGG- -5'
29003 5' -64.3 NC_006146.1 + 11004 0.71 0.350852
Target:  5'- -aUCUUCGaGGGCCCCGGCcucgagGCCCUCUg -3'
miRNA:   3'- ccAGGGGC-CCUGGGGUCG------UGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 11050 0.66 0.626219
Target:  5'- aGGUgUuuGGGuacgacgGCUaCAGCGCCCUCUCu -3'
miRNA:   3'- -CCAgGggCCC-------UGGgGUCGUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 11811 0.67 0.527889
Target:  5'- gGGaCCCUgcaggaggggaagguGGGACCCCuuGCGCCgggCCCu -3'
miRNA:   3'- -CCaGGGG---------------CCCUGGGGu-CGUGGga-GGG- -5'
29003 5' -64.3 NC_006146.1 + 12349 0.71 0.33659
Target:  5'- --gCCCCuGGGCCUCAG-GCCCUCCg -3'
miRNA:   3'- ccaGGGGcCCUGGGGUCgUGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 12363 0.67 0.54259
Target:  5'- aGGagCCCCaGGGACCCCGGgACUUuaUCa -3'
miRNA:   3'- -CCa-GGGG-CCCUGGGGUCgUGGGagGG- -5'
29003 5' -64.3 NC_006146.1 + 12478 0.72 0.296373
Target:  5'- cGGgCCCCucuGGACUCCGGCuucCCCaUCCCa -3'
miRNA:   3'- -CCaGGGGc--CCUGGGGUCGu--GGG-AGGG- -5'
29003 5' -64.3 NC_006146.1 + 12925 0.7 0.396158
Target:  5'- uGGUgCCuCUGGaGGCCCUGGC-CCCgCCCg -3'
miRNA:   3'- -CCA-GG-GGCC-CUGGGGUCGuGGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 13057 0.66 0.598737
Target:  5'- --aCUCCGGG-CCCCaaGGCGgCCgCCCu -3'
miRNA:   3'- ccaGGGGCCCuGGGG--UCGUgGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 13117 0.66 0.586467
Target:  5'- gGGUCCggccucucCUGGGgcagcaggcucaacACCCCGGa--CCUCCCa -3'
miRNA:   3'- -CCAGG--------GGCCC--------------UGGGGUCgugGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 13373 0.68 0.506127
Target:  5'- cGcCCUCGGGGCCCagGGC-CCCUagUCCa -3'
miRNA:   3'- cCaGGGGCCCUGGGg-UCGuGGGA--GGG- -5'
29003 5' -64.3 NC_006146.1 + 13434 0.8 0.083154
Target:  5'- gGGUCCCaggccagccggaGGGACCCCGGCAgCCCggguggCCCc -3'
miRNA:   3'- -CCAGGGg-----------CCCUGGGGUCGU-GGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 13524 0.75 0.184917
Target:  5'- cGUCCCgagaaGGGACCCgAGCAgCCCcgUCCCc -3'
miRNA:   3'- cCAGGGg----CCCUGGGgUCGU-GGG--AGGG- -5'
29003 5' -64.3 NC_006146.1 + 13577 0.7 0.388349
Target:  5'- -cUCCCUcgcggacaGGGGCcuCCCAGgGCCCUCCa -3'
miRNA:   3'- ccAGGGG--------CCCUG--GGGUCgUGGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 13635 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.