miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 170622 0.67 0.54259
Target:  5'- cGcCCCCGGGucuuCCCgGGCuccCCCUCa- -3'
miRNA:   3'- cCaGGGGCCCu---GGGgUCGu--GGGAGgg -5'
29003 5' -64.3 NC_006146.1 + 170429 0.72 0.302808
Target:  5'- gGGUCCCgCGGGG-CCCGGCGCgugCCgggggaCCCg -3'
miRNA:   3'- -CCAGGG-GCCCUgGGGUCGUG---GGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 170317 0.69 0.428382
Target:  5'- uGG-CgCCGGGccgcgcCCCCGGC-CCCUCUCc -3'
miRNA:   3'- -CCaGgGGCCCu-----GGGGUCGuGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 169998 0.66 0.583642
Target:  5'- gGGUCCCgGGGGgcggcgcgcggccuuCCCCcGUcUgCUCCCg -3'
miRNA:   3'- -CCAGGGgCCCU---------------GGGGuCGuGgGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 169744 0.75 0.189261
Target:  5'- gGGgagCCCCGGGgcgGCCCgGGgACCCUCgCg -3'
miRNA:   3'- -CCa--GGGGCCC---UGGGgUCgUGGGAGgG- -5'
29003 5' -64.3 NC_006146.1 + 169690 0.67 0.54259
Target:  5'- cGcCCCCGGGucuuCCCgGGCuccCCCUCa- -3'
miRNA:   3'- cCaGGGGCCCu---GGGgUCGu--GGGAGgg -5'
29003 5' -64.3 NC_006146.1 + 169571 0.74 0.232527
Target:  5'- -uUCCCCGGGGCCCgAGCGCgCgUCg- -3'
miRNA:   3'- ccAGGGGCCCUGGGgUCGUG-GgAGgg -5'
29003 5' -64.3 NC_006146.1 + 169498 0.72 0.302808
Target:  5'- gGGUCCCgCGGGG-CCCGGCGCgugCCgggggaCCCg -3'
miRNA:   3'- -CCAGGG-GCCCUgGGGUCGUG---GGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 169386 0.69 0.428382
Target:  5'- uGG-CgCCGGGccgcgcCCCCGGC-CCCUCUCc -3'
miRNA:   3'- -CCaGgGGCCCu-----GGGGUCGuGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 169066 0.66 0.583642
Target:  5'- gGGUCCCgGGGGgcggcgcgcggccuuCCCCcGUcUgCUCCCg -3'
miRNA:   3'- -CCAGGGgCCCU---------------GGGGuCGuGgGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 168812 0.75 0.189261
Target:  5'- gGGgagCCCCGGGgcgGCCCgGGgACCCUCgCg -3'
miRNA:   3'- -CCa--GGGGCCC---UGGGgUCgUGGGAGgG- -5'
29003 5' -64.3 NC_006146.1 + 168758 0.67 0.54259
Target:  5'- cGcCCCCGGGucuuCCCgGGCuccCCCUCa- -3'
miRNA:   3'- cCaGGGGCCCu---GGGgUCGu--GGGAGgg -5'
29003 5' -64.3 NC_006146.1 + 168639 0.74 0.232527
Target:  5'- -uUCCCCGGGGCCCgAGCGCgCgUCg- -3'
miRNA:   3'- ccAGGGGCCCUGGGgUCGUG-GgAGgg -5'
29003 5' -64.3 NC_006146.1 + 168566 0.72 0.302808
Target:  5'- gGGUCCCgCGGGG-CCCGGCGCgugCCgggggaCCCg -3'
miRNA:   3'- -CCAGGG-GCCCUgGGGUCGUG---GGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 168454 0.69 0.428382
Target:  5'- uGG-CgCCGGGccgcgcCCCCGGC-CCCUCUCc -3'
miRNA:   3'- -CCaGgGGCCCu-----GGGGUCGuGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 168134 0.66 0.583642
Target:  5'- gGGUCCCgGGGGgcggcgcgcggccuuCCCCcGUcUgCUCCCg -3'
miRNA:   3'- -CCAGGGgCCCU---------------GGGGuCGuGgGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 167941 0.7 0.395372
Target:  5'- cGUaCCUCGcGGugUCCAGCGCCUggugucugaugacUCCCa -3'
miRNA:   3'- cCA-GGGGC-CCugGGGUCGUGGG-------------AGGG- -5'
29003 5' -64.3 NC_006146.1 + 167880 0.75 0.189261
Target:  5'- gGGgagCCCCGGGgcgGCCCgGGgACCCUCgCg -3'
miRNA:   3'- -CCa--GGGGCCC---UGGGgUCgUGGGAGgG- -5'
29003 5' -64.3 NC_006146.1 + 167826 0.67 0.54259
Target:  5'- cGcCCCCGGGucuuCCCgGGCuccCCCUCa- -3'
miRNA:   3'- cCaGGGGCCCu---GGGgUCGu--GGGAGgg -5'
29003 5' -64.3 NC_006146.1 + 167706 0.74 0.232527
Target:  5'- -uUCCCCGGGGCCCgAGCGCgCgUCg- -3'
miRNA:   3'- ccAGGGGCCCUGGGgUCGUG-GgAGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.