miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 167634 0.74 0.212349
Target:  5'- gGGUCCCgCGGGG-CCCGGCGCgugCCgggggCCCg -3'
miRNA:   3'- -CCAGGG-GCCCUgGGGUCGUG---GGa----GGG- -5'
29003 5' -64.3 NC_006146.1 + 167522 0.69 0.428382
Target:  5'- uGG-CgCCGGGccgcgcCCCCGGC-CCCUCUCc -3'
miRNA:   3'- -CCaGgGGCCCu-----GGGGUCGuGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 167202 0.66 0.583642
Target:  5'- gGGUCCCgGGGGgcggcgcgcggccuuCCCCcGUcUgCUCCCg -3'
miRNA:   3'- -CCAGGGgCCCU---------------GGGGuCGuGgGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 166036 0.68 0.497172
Target:  5'- gGGUgCCUGuGGCCCCcGC-CCCUgCCCc -3'
miRNA:   3'- -CCAgGGGCcCUGGGGuCGuGGGA-GGG- -5'
29003 5' -64.3 NC_006146.1 + 165963 0.73 0.237817
Target:  5'- uGGUCCCCGGGGCaCagAGCACggCCaCCCg -3'
miRNA:   3'- -CCAGGGGCCCUG-GggUCGUG--GGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 164464 0.74 0.202836
Target:  5'- gGGcCCCauGGACCCCAGgGCCCacauggCCCu -3'
miRNA:   3'- -CCaGGGgcCCUGGGGUCgUGGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 162484 0.66 0.598737
Target:  5'- uGGUCCCCaGGG--UCCGGacuaugaagACCCUCCUc -3'
miRNA:   3'- -CCAGGGG-CCCugGGGUCg--------UGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 161946 0.7 0.396158
Target:  5'- --aCCCUGGGAgaCCCGGCuuCCCUUUCg -3'
miRNA:   3'- ccaGGGGCCCUg-GGGUCGu-GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 161875 0.71 0.329619
Target:  5'- aGGcUCCCUGGGAgaCCCGGCuuCCCUuuugggcaacgcCCCg -3'
miRNA:   3'- -CC-AGGGGCCCUg-GGGUCGu-GGGA------------GGG- -5'
29003 5' -64.3 NC_006146.1 + 161808 0.67 0.51515
Target:  5'- aGGcUCCCUGGGAgaCCCGGCuuuCCUUuugggccacgcCCCg -3'
miRNA:   3'- -CC-AGGGGCCCUg-GGGUCGu--GGGA-----------GGG- -5'
29003 5' -64.3 NC_006146.1 + 160347 0.69 0.445064
Target:  5'- cGGUCCaugucaCGGGGaacuggcgUCUCAGCGCCCUuggcaggccgCCCa -3'
miRNA:   3'- -CCAGGg-----GCCCU--------GGGGUCGUGGGA----------GGG- -5'
29003 5' -64.3 NC_006146.1 + 159087 0.66 0.595902
Target:  5'- gGGUCCCaCcuuccccuccugcaGGGuCCCCAGC-CCCUgUg -3'
miRNA:   3'- -CCAGGG-G--------------CCCuGGGGUCGuGGGAgGg -5'
29003 5' -64.3 NC_006146.1 + 158548 0.77 0.146122
Target:  5'- gGGUCCCUGGGGCUCCuucucCAgCUUCCCg -3'
miRNA:   3'- -CCAGGGGCCCUGGGGuc---GUgGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 158441 0.67 0.533386
Target:  5'- aGGggCCCgaGGGccugaaagGCCCCGGCGCCUggCUCa -3'
miRNA:   3'- -CCa-GGGg-CCC--------UGGGGUCGUGGGa-GGG- -5'
29003 5' -64.3 NC_006146.1 + 157633 0.67 0.56115
Target:  5'- aGGggCUCUGGGGCgCCGGUcCCCugguUCCCc -3'
miRNA:   3'- -CCa-GGGGCCCUGgGGUCGuGGG----AGGG- -5'
29003 5' -64.3 NC_006146.1 + 157532 0.67 0.51515
Target:  5'- aGGggCCCUGGG-CCCCgagGGCGgcucCCCUCUg -3'
miRNA:   3'- -CCa-GGGGCCCuGGGG---UCGU----GGGAGGg -5'
29003 5' -64.3 NC_006146.1 + 157468 0.72 0.283824
Target:  5'- gGGUCCCUccggcuggccuGGGACCCggggaGGCACCCUgaggugcuccUCCg -3'
miRNA:   3'- -CCAGGGG-----------CCCUGGGg----UCGUGGGA----------GGG- -5'
29003 5' -64.3 NC_006146.1 + 156973 0.67 0.56115
Target:  5'- gGGcUCCCCcGGGCCCaccCGCCaCUCCUu -3'
miRNA:   3'- -CC-AGGGGcCCUGGGgucGUGG-GAGGG- -5'
29003 5' -64.3 NC_006146.1 + 156072 0.74 0.227336
Target:  5'- cGG-CCCCGGG-CCCgAGaccguGCCCUCCUc -3'
miRNA:   3'- -CCaGGGGCCCuGGGgUCg----UGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 156045 0.68 0.488289
Target:  5'- -cUCCCUGGcuGCCCCcuCGgCCUCCCg -3'
miRNA:   3'- ccAGGGGCCc-UGGGGucGUgGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.