miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 33497 1.12 0.000418
Target:  5'- uGGUCCCCGGGACCCCAGCACCCUCCCg -3'
miRNA:   3'- -CCAGGGGCCCUGGGGUCGUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 29024 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 13524 0.75 0.184917
Target:  5'- cGUCCCgagaaGGGACCCgAGCAgCCCcgUCCCc -3'
miRNA:   3'- cCAGGGg----CCCUGGGgUCGU-GGG--AGGG- -5'
29003 5' -64.3 NC_006146.1 + 44380 0.66 0.630965
Target:  5'- --cCCCCgcccggggggcguguGGGGCCgggcaCGGCGCCUUCCUc -3'
miRNA:   3'- ccaGGGG---------------CCCUGGg----GUCGUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 19590 0.8 0.083154
Target:  5'- gGGUCCCaggccagccggaGGGACCCCGGCAgCCCggguggCCCc -3'
miRNA:   3'- -CCAGGGg-----------CCCUGGGGUCGU-GGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 22668 0.8 0.083154
Target:  5'- gGGUCCCaggccagccggaGGGACCCCGGCAgCCCggguggCCCc -3'
miRNA:   3'- -CCAGGGg-----------CCCUGGGGUCGU-GGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 28824 0.8 0.083154
Target:  5'- gGGUCCCaggccagccggaGGGACCCCGGCAgCCCggguggCCCc -3'
miRNA:   3'- -CCAGGGg-----------CCCUGGGGUCGU-GGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 33854 0.8 0.087791
Target:  5'- uGGUCCCCGGaACCCCAgGCcCCCaCCCg -3'
miRNA:   3'- -CCAGGGGCCcUGGGGU-CGuGGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 109057 0.77 0.129639
Target:  5'- --gCCCCGGGAgUCCCGGCACCagcCCCa -3'
miRNA:   3'- ccaGGGGCCCU-GGGGUCGUGGga-GGG- -5'
29003 5' -64.3 NC_006146.1 + 22869 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 13635 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 137674 0.78 0.112133
Target:  5'- --cCCCCGGaACCCCAGC-CCCaUCCCg -3'
miRNA:   3'- ccaGGGGCCcUGGGGUCGuGGG-AGGG- -5'
29003 5' -64.3 NC_006146.1 + 33667 0.9 0.01577
Target:  5'- uGGUCCCCGGGACCCCAgGCcCCCaCCCg -3'
miRNA:   3'- -CCAGGGGCCCUGGGGU-CGuGGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 16713 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 13434 0.8 0.083154
Target:  5'- gGGUCCCaggccagccggaGGGACCCCGGCAgCCCggguggCCCc -3'
miRNA:   3'- -CCAGGGg-----------CCCUGGGGUCGU-GGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 126391 0.79 0.106806
Target:  5'- uGGaUCCCaccaGGGGCCUCuGCGCCCUCuCCg -3'
miRNA:   3'- -CC-AGGGg---CCCUGGGGuCGUGGGAG-GG- -5'
29003 5' -64.3 NC_006146.1 + 19791 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 54509 0.75 0.180661
Target:  5'- -cUCCCCaGGGCCCC-GCuCCCUCCUc -3'
miRNA:   3'- ccAGGGGcCCUGGGGuCGuGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 16512 0.8 0.083154
Target:  5'- gGGUCCCaggccagccggaGGGACCCCGGCAgCCCggguggCCCc -3'
miRNA:   3'- -CCAGGGg-----------CCCUGGGGUCGU-GGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 25746 0.8 0.083154
Target:  5'- gGGUCCCaggccagccggaGGGACCCCGGCAgCCCggguggCCCc -3'
miRNA:   3'- -CCAGGGg-----------CCCUGGGGUCGU-GGGa-----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.